Setaria italica (foxtail millet): 101785487
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Entry
101785487 CDS
T02818
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage stimulation factor subunit 50
KO
K14406
cleavage stimulation factor subunit 1
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101785487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101785487
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
101785487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mito_carr
Beta-prop_WDR5
WD40_Prp19
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
WDR55
EIF3I
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_Aladin
NBCH_WD40
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Cytochrom_D1
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_NOL10_N
Beta-prop_NWD2_C
Beta-prop_IFT122_1st
Ge1_WD40
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_IFT140_1st
PD40
Motif
Other DBs
NCBI-GeneID:
101785487
NCBI-ProteinID:
XP_014660081
LinkDB
All DBs
Position
IX:complement(5299996..5308327)
Genome browser
AA seq
647 aa
AA seq
DB search
MDTTTRAAKIPSLHQTEINWDNLDKTKLYVVGAGMFSGVTVALYPVSVVKTRMQVASGDA
MRRNALATFKNILKVDGVPGLYRGFPTVIIGAVPTRIIFLTALETTKAASLKLVEPFKLS
EPVQAAFANGLAGLSASTCSQAIFVPIDVISQKLMVQGYSGHARYKGGIDVARKVIKADG
VKGLYRGFGLSVMTYAPSSAVWWASYGSSQRIIWSALGHWQNKEEAPSQLKIVGVQASGG
IIAGAVTSFVTTPIDTIKTRLQVMDNENKPKAGQVVKKLIAEDGWKGLYRGLGPRFFSSS
AWGTSMIWXMLTSVLCSVQDVRGSSKSFPKHEAKHVSDHKNIARCARFSPDGKYFATGSA
DTSIKFFEVAKIKQTMVGDSKDGSARPVIRTFYDHMQPINDLDFHPESPILISASKDNTI
KFFDFSKTNARKAFRVIQDTHNVRSVCFHPCGDYLLAGTDHPVAHLYDVNTFTCYLSANP
QDSGSPINQVRYSCTGSLYVTASKDGSLRIWDGVSAECVRPIIGAHGSAEATSAVFTKDE
RYLLSCGKDSSVKLWEVGTGRLVKQYAGAVRRQFRCQAVFNETEEFVLSVDEQNNEVVVW
DALTAEKVARLPPGGTGAPRWLDHSPVEPAFVTCGNDRSIRFWKQTV
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggatacgaccaccagggccgccaagatcccgtcgctccaccagacggagatcaactgg
gacaacctcgacaagaccaagctctatgtggtgggcgctggcatgttcagcggcgtcacc
gtggcgctgtacccggtctcggtagtcaagacccggatgcaggtcgcctctggggacgcc
atgaggaggaacgcgctggccaccttcaagaacatcctcaaggtggacggggtgccaggg
ctgtaccggggttttcctactgttatcatcggggctgtcccaactaggatcatcttcctc
acggcacttgagacaaccaaagctgcttcgctcaagctcgttgagcccttcaagctgtcg
gagccggtgcaggctgcctttgccaatggccttgccggtctgtctgcatctacgtgctca
caggctatttttgttccgattgatgtgataagccagaaattgatggttcaaggatattct
ggtcacgccagatataaaggtggaatagatgttgctcgaaaggtcataaaggctgatggg
gttaaggggctatacagaggatttggactgtctgttatgacctacgcaccgtctagtgct
gtgtggtgggcgagttatggatccagccagcgcataatttggagtgcccttggccattgg
caaaacaaagaagaggctcctagccagttgaaaatagttggtgttcaagcgtcaggggga
attattgctggtgcagtgacctcttttgttacaactcccattgatacaatcaagaccagg
ctgcaggttatggataacgaaaacaagccaaaagctgggcaagttgttaaaaaattgatt
gcagaagatggatggaaaggtttgtaccgagggttaggtccaagatttttcagctcatca
gcttggggtacctcaatgatatggtgaatgttgacgtcggtgctgtgtagtgtgcaggac
gtcaggggctcgtcgaagagcttccccaagcacgaggcgaagcacgtctctgaccataag
aacattgctcggtgtgccagatttagtcctgatggcaagtatttcgcaactgggagtgct
gacacatcgattaagttcttcgaggttgctaaaattaagcagacgatggtaggagactcc
aaagatggatctgcgcggcctgtgatacgaacattttatgatcacatgcagcccatcaat
gatctggattttcatcctgagagtccaatactgatatcagcttcgaaagacaataccata
aaattctttgacttctcaaaaaccaatgcaaggaaagcattcagagttattcaggatacc
cataatgttagatctgtatgttttcatccttgtggggattaccttttagcaggaactgat
cacccagttgctcatctgtatgatgtaaacactttcacatgctatttatcagcaaatcca
caggattctggttctcccattaaccaggttcgttactcttgtactgggagcttgtatgtt
actgcttctaaagatggctctctgcgcatctgggatggagtttctgctgaatgtgttcgt
cctattattggagcacatggatctgcggaagctactagtgcagtttttaccaaagatgag
aggtacctcctgtcttgtgggaaggattcttctgtcaagttgtgggaagttgggactgga
cgacttgtgaagcaatatgcaggagctgttcgcagacaattccgttgtcaggctgtcttt
aatgaaactgaggagttcgtgctatcagttgatgaacaaaacaatgaggttgtcgtctgg
gatgcacttactgctgaaaaagttgcaagattgccccctggcggcaccggtgctcctaga
tggcttgaccactccccagtagagccagcgtttgttacttgcggaaatgacagatccatc
agattctggaaacaaactgtgtag
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