Setaria italica (foxtail millet): 101786095
Help
Entry
101786095 CDS
T02818
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita00040
Pentose and glucuronate interconversions
sita01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
101786095
Enzymes [BR:
sita01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
101786095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
101786095
NCBI-ProteinID:
XP_004973166
LinkDB
All DBs
Position
VI:14877986..14879224
Genome browser
AA seq
317 aa
AA seq
DB search
MRQNRGPGVIPYTVTDPGDDPVRPGPGTLRYGATVLPGKVWITFQRGMHIRLVQPLFVKS
FTVIDGRGADVHIAGGAGIMLYQVSNVIIHGLHIHDCRSQPTGQVVVPGGAVRPAGGMDG
DAIRLVSSTKVWIDHNTLSRSEDGLLDVTVGSTDVTVSNNWFLNHDKVMLLGHDDGHAAD
RRMRVTVAFNRFGPNVNQRMPRIRHGYAHVVNNLYDGWVQYAIGGSMGPSVKSQGNLFVA
SGADNKKVTRRMPVGGKDWDWASIGDSFQNGAFFKQTGSRVRPNYNKHQAFAAASANEVR
SLTKDAGALSCKAGSAC
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgcggcagaaccgtggccccggggtgatcccatacacggtcactgaccccggcgacgac
cccgtgcgcccaggccccggcaccctgcgctacggcgcgacggtgctgcccgggaaggtc
tggatcaccttccagaggggcatgcacatcaggctggtgcagccgctcttcgtcaagagc
ttcacggtcatcgacgggcgcggcgccgacgtgcacatcgccggcggcgcgggcatcatg
ctctaccaggtgagcaacgtgatcatccacgggctgcacatccacgactgccggtcgcag
cccacggggcaggtggtcgtccccggcggcgcggtgcggccggccggtggcatggacggc
gacgccatccggctagtgtcgagcaccaaggtgtggatcgaccacaacaccctgtcccgg
agcgaggatgggctcctggacgtgacggtcggctccacggacgtgaccgtctccaacaac
tggtttttgaaccacgacaaggtcatgctgctcggccacgacgacggccacgccgccgac
cgccggatgcgcgtcaccgtcgcgttcaaccgcttcggccccaacgtgaaccagcgcatg
ccaaggattaggcacggctacgctcacgttgtgaacaacctctatgatggatgggtacaa
tacgccatcggaggaagcatggggccgagcgtcaagagccagggcaacctgttcgtagcc
tccggggcagataacaagaaggtgacgagaaggatgccggtcggggggaaggattgggac
tgggcctccatcggggactccttccagaacggcgccttcttcaagcagacgggcagcagg
gtccggccgaactacaacaagcaccaggcattcgcggcggccagcgccaacgaagtacgg
tcgctgaccaaggacgccggcgctctcagctgcaaggccgggtccgcgtgctga
DBGET
integrated database retrieval system
