Setaria italica (foxtail millet): 101786378
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Entry
101786378 CDS
T02818
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101786378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101786378
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101786378
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101786378
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
101786378
NCBI-ProteinID:
XP_012704407
UniProt:
K3YQX1
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Position
I:complement(39812120..39822002)
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AA seq
618 aa
AA seq
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MSGLLNSNLNSSASNLTDSTGRPFTASFSGQSGSIPGFHHSGLHNIHGSFNLPSMPGPLA
QRNGAMSGLPSSGVQQPGGSISGRFTSNNLPVAMSQIPHAHSGVSGRGMNVGAGPAFSSS
MSIGGNIQSLSSSLGAGGSRNSVPGMSVSPSLGNLGPRITSSVGNIVGGSNIGRNISSGG
LSVPSIASRMNLSGNAASGSLNVQGSSRIMNGLLQQASPQLINMFGSSYPTSGGSLSQNQ
IQAGNNSLSSMGMLHDANDTAPFDINDFPQLTGRPNSAGGPQGQYGSLRKQGVGVNTIVQ
QNQEFSIQNEDFPALPGFKGNSSDYAMELHHKEQLHENVPVMQTQQYPMARSVGFNLGSS
YPPNRQQHLQGANSVQNAGTQNIGLRPLSQTPSLASYDQLLQQYQQPQTQNHFRMQQMPS
AAHSFRDQIQKIQGGPSPPDPYGLLGLLGVIRMNDAELVSLALGIDLTTLGLNLNSPDNL
YKTFGSPWSNEPAKGDPDFHIPACYFSEQSSPLQPLVFQKLHMLTLFYIFYSMPKDEAQL
YAAYELCNRGWFYHKELRSWFTRIPNVEPLVKTPLYERGSYGRFDPQIWDTVRKDNFLLQ
YELVEKRPALPSVAQNVR
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcttgctgaattcaaaccttaatagttccgcgtcaaatcttacggactcaacc
ggaagaccatttacagcatccttttcgggtcaatccggatcaattccaggcttccatcat
tctggtttgcacaacattcatggaagtttcaaccttccaagtatgcctggaccacttgca
caaaggaatggtgcaatgagtggccttccatcctctggggttcaacaacctggagggagc
atttctgggagattcacttcaaataaccttccggttgccatgtctcagattccacatgca
cattctggtgtcagtggtagagggatgaatgttggcgcaggtccagcatttagtagcagc
atgagtattggtggtaacattcaaagcttatcctcgagcttgggcgccggtggtagtcgc
aattctgttcctgggatgtcagtatctccatctttaggaaacttgggtccacggatcaca
agttctgtaggaaatattgtaggtggaagtaatattggaagaaatataagctctggtggc
ttatctgtgccaagtattgcatcacggatgaatctgagtggcaatgctgcgagtggtagt
ctaaatgtgcaaggatccagcaggattatgaatggcctgcttcagcaagcatcccctcag
ttgataaatatgtttggaagttcatatccaacatctggagggtcattatcacagaaccaa
attcaagccggaaataattctctaagttctatgggtatgttgcatgatgccaatgatact
gctccatttgacataaatgattttccccaattgactggtcgacctaattccgctggtggt
ccacaaggacaatatggatcattacgcaagcaaggagttggtgttaataccattgttcaa
caaaaccaggaattcagcattcaaaatgaagacttcccggctttgcctggattcaaaggt
aactcttcagattatgctatggagttgcatcataaggaacaacttcacgagaatgtgccc
gtaatgcaaacacagcagtatcctatggcaaggtcagttggctttaatttaggaagtagc
tacccaccaaatcgtcagcaacacctgcaaggtgctaattcagtccagaatgctggaacc
caaaatattggactaagaccactcagtcaaactcctagtttggcatcatatgatcaactt
ctgcagcaataccagcaaccacagactcaaaatcatttcaggatgcagcagatgccttca
gctgcacattcatttcgggatcagattcaaaagattcagggtggaccgtcaccacctgac
ccatatggcttgttaggattactgggagttataaggatgaatgatgctgaattagtatct
cttgctttaggaatagatttaacaacattgggtttgaacttgaattcacctgataatcta
tacaagacatttggctcaccctggtcaaatgagccagcaaaaggggatcctgattttcat
attccagcttgctacttctccgagcaatcttcaccattacagcccctagtttttcagaag
cttcacatgttaaccctgttttacatcttctacagcatgccaaaggatgaagctcagcta
tatgctgcctatgaactatgtaatcgaggatggttttaccataaagaattacggtcatgg
ttcacaagaatcccaaacgtggagcctctagtcaagactcctctctatgaacgtgggtct
tatggtcgctttgacccacagatttgggatacagtccgtaaggacaactttcttctccaa
tacgagctggtagagaaaaggccagcgctgccttctgtagcgcaaaatgttagatga
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