Setaria italica (foxtail millet): 101786816
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Entry
101786816 CDS
T02818
Name
(RefSeq) exosome complex component RRP41 homolog
KO
K11600
exosome complex component RRP41
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101786816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101786816
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
101786816
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
101786816
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
101786816
NCBI-ProteinID:
XP_004961250
UniProt:
K3Z970
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All DBs
Position
III:10825389..10828960
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AA seq
242 aa
AA seq
DB search
MEYVDPLTGFRVDGRRPNEMRKLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKG
QQVNSKEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQID
IFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYLEDSAGG
ADVTVGILAKMDKVTLLQMDAKLAMDTFENVMGLAIEGCKAIATYIREVLLENTKRLECQ
RG
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
atggagtacgtggaccccctcaccggcttccgcgttgacggtcgccgccccaacgagatg
cggaagctcaagggcgaggtcggcgtcgtcgcgcgggccgacgggtcggcgctgttcgag
atgggcaataccagggtcatcgccgctgtctatggtcctcgagaggtccagaacaaaggt
cagcaagtaaacagcaaagaggctttggttcgttgtgagtataggatggcagaatttagt
acaggagatcggaggagaaagccaaaaggtgacaggcgatcaacggaaatttctcttgtt
attcgacagacaatggaggcaagcatattaactcatttaatgccacgttcacagattgat
atatttgtccaagttcttcaagctgatggtggaacaaggtcagcatgcatcaatgctgca
acactagctcttgcagatgccgggattccaatgcgagacattgtcacatcttgtagtgct
gggtatctgtgttctactcctttgctcgatcttaattacttagaagacagtgctgggggt
gcagatgtcacagttggtattcttgcaaaaatggacaaagtgactcttctgcagatggat
gcaaaattagcaatggatacatttgaaaacgtaatgggacttgccatagaagggtgcaaa
gcaattgcaacttacatccgagaggtgctgttggagaacacaaagcggctggagtgtcag
cgtggttaa
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