Setaria italica (foxtail millet): 105915120
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Entry
105915120 CDS
T02818
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 3b-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
sita
Setaria italica (foxtail millet)
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sita03036
]
105915120
Chromosome and associated proteins [BR:
sita03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
105915120
microRNA pathway
RISC loading complex
105915120
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
DEAD
Helicase_C
ResIII
PAZ
dsrm
DND1_DSRM
AAA_22
Motif
Other DBs
NCBI-GeneID:
105915120
NCBI-ProteinID:
XP_012704427
LinkDB
All DBs
Position
IX:complement(15672430..15683651)
Genome browser
AA seq
1626 aa
AA seq
DB search
MRDRSRACRYQVEVFAAALRGNTIAVLDTGSGKTMVAVMLAREHARRARAGEAAPRRIVA
FLAPTVHLVHQQFEVIREYTDLDAVECHGASGVGDWNARQWKEAIGTKEIVVMTPQILLD
ALRHAFLTMSVMSLLIFDECHRACGNHPYSRIMKEFYVDSDWRPTIFGMTASPVATKGAS
TIGDCEAQIAQLELILDAKVLSPAAKTSVVLKFIEFFXESQVCSKLMSISYMLSQVYIVE
DRNELERFSPGATIVNKYYDPYLFDLDDLESKLQTLFEEFDGLLVSLQESAPNKFEDTDS
ILEMSRKSLSRYHGKILYGLNTLGPIVTLEVVKIYNESINAVGDSEDCLFSKASQNLQVS
YFKEALFLIEEILPQGYEELMKSESGSAELTRRGYISSKEVLCLIFVERIMTAKAVERFM
RGIENFSRFSISYLTGGSTSKDALSPAVQRFTLDLFRAGKVNLLFTTDVTEEGIDVPNCS
CVIRFDLPRTVCSYVQSRGRARRSSSSYVLMIERGNLVQQEHIFRIIRTEYYVKNFALHK
SPNTPSHDLPLEEKYIYHVDSTGATITADCCVNLIHKYCEKLPKDRYYMPKPSFDVGLKD
GSYQCTLTMPPNAAFRSIVGPQSSTCNLAKQLVCLEACKKLHQLGELNDHLVPLTEEPND
IDTTVTDGKCLSGPGTTKRKELHGTINVHGLSGNWIHGSETATLNTYRFDFVCDQEGEIY
AGFVLLMESVLDDDVANSKIDLFLIPNKMVYTTVTPCGKIQLNKEQLHKGKLFQEFFFNG
IFGRLFHGSRTSELQREFIFRKGHEIQWSSDNMYLLLPLKHSSYIQRDLNIPWEAVESCS
DAVEQLRNLYMEDGNLSYEKLSPNKINEGEEIIHLANRSLHFSRVKDSVVLSLHTGRIYS
VLDLILDTTADDSFDEMYNGKASPFSSFVDYYHQKYGIVIQHQGQPLLLLKQSHNAHNLL
FSKLKYTDGSTGNPLLLEKEQIHARVPPELLIHIDVTTDILKSFYLLPSVMHRLQSLMLA
SQLRSDIGCTQHIPSSLILEAITTLRCCETFSLERLELLGDSVLKYVIGCDLFLRYPMKH
EGHLSDMRSTAVCNATLHKHGIWRSLQGYVRDSAFDPRRWVAPGQISLRPCPCTCGVETA
FVPFSGRYIRDDPSFVVGKPCDRGHRWMCSKTVSDCVEALVGAYYVGGGIAAALWVMQWF
GIDIRCDMKLVQEVKSNASRLCYLSKFKDIEELEAKLKYNFSVKGLLLEAITHPSLQELG
VDYCYQRLEFLGDSVLDLLITRHLYASHTDVDPGELTDLRSALVSNENFAQAVVRNNMHN
HLQHGSGILLEQVTEYVRFNLECNQKENEFLQQAICKVPKVLGDIMESITGAIFIDVNFN
VDLVWKIVEPLLSPMITPDKLALPPYRELLELCSHLGCFINSKCTSKAEELIIEMTVQLK
DELLIAQGHDRNRKSANAKAAARILVDLKKRGLSLKQCLSKAKQLDTVSSELQSQLTSLE
FRHDFPDVNGNLSLEGLSSVGTTVVLPLKMDKGGPRTALFRLCKILQWPMPKFEFVEQRF
RTPIVLDGVTTTNFNSFVSTITLHIPDVTVITLQGDQRTDKKSSQDSASLIMLEKLQQLK
VCMCKM
NT seq
4881 nt
NT seq
+upstream
nt +downstream
nt
atgcgggatcgctcgcgcgcgtgcaggtaccaggtggaggtgttcgcggcggcgctgcgc
gggaacaccatcgcggtgctcgacaccggctccgggaagaccatggtcgccgtcatgctg
gcgcgggagcacgcccgccgcgcgcgcgctggcgaggcggccccgcgccggatcgtggca
ttcctcgcgcccaccgtgcacctcgtccaccagcaattcgaggtgattcgggagtacacg
gacctcgacgcggtggagtgccatggggcatcgggggtcggtgactggaacgctcgtcag
tggaaggaggcaatcgggactaaggagatagttgttatgacgccacagatattgttggac
gctctgaggcatgcttttctaactatgagtgtgatgagcttgctaatatttgatgaatgt
catcgtgcttgtggaaaccatccctactcacgaataatgaaggagttttacgttgattct
gattggaggccaactatatttggaatgacggcatctccagttgctacaaaaggagcttct
actataggagattgtgaagcacagattgctcaacttgaactgatattggatgccaaggtt
ctttctcctgcagccaaaacttctgtagttttgaaatttattgagttcttttaggaaagc
caagtttgcagcaaattgatgtcaatatcttacatgttatcccaggtatatattgttgaa
gataggaatgaacttgagagattttcacctggtgcaacaattgttaataaatactatgat
ccttacttgtttgatttggatgatctggaatcaaagttacagacactgtttgaggagttt
gatggtttgttggttagtctacaagaatcagcccctaataaatttgaagacactgatagt
atcttggagatgtcaagaaagagcttgtccaggtaccatgggaagatattgtatggactg
aatactcttggtccaattgttaccttggaggtggtgaaaatatataatgaaagcatcaat
gcagttggtgattctgaagattgcctcttttctaaagctagccagaacttacaggtgtcc
tattttaaagaagctttatttttgatagaggaaattctgccacagggttatgaggaactg
atgaaatcagaatctggttctgcggaactaactaggaggggatatatttcttctaaagaa
gtcctttgcctgatttttgtagaaagaattatgacagccaaagctgttgaaaggtttatg
agaggaattgagaacttctctcgcttttcaatttcttacttaactggagggagtacatca
aaagatgctttgagcccagcagtacagagatttactttggatttgttccgagctgggaaa
gtgaatttgcttttcacaacagatgttactgaagagggcattgatgtacctaactgttct
tgtgtgatacgcttcgaccttcctagaactgtttgtagctatgtccagtctcgtgggcgt
gccagaagaagcagttcgagttatgttcttatgattgagaggggaaacttggtgcagcaa
gaacacatatttcgtataatacgaactgaatactatgttaaaaacttcgcactgcataaa
tcgcccaatactccatcccatgatttgcctctcgaagagaagtacatataccatgttgac
tcaacaggagcgactatcaccgcagactgctgtgtcaatctaattcataaatattgtgag
aagcttccaaaagataggtattacatgccaaagccttcctttgatgtgggtctcaaagat
gggtcttatcaatgtaccttgacaatgcctcccaatgctgcatttcgaagtatagttggt
cctcaaagcagtacatgtaatttagctaagcagcttgtatgccttgaggcatgcaagaaa
ttgcaccagctgggagaactcaatgatcatctggtacccttgactgaagaacctaatgat
attgatacaactgtaacagatggaaaatgtctttctggaccaggaacaactaaacgaaag
gagcttcatggaactataaatgttcatggtctatctggaaattggatccatggaagtgaa
actgccactctgaatacttatagatttgattttgtttgtgatcaagaaggtgaaatttat
gctgggttcgttctcttaatggaatcagtacttgatgatgatgtggcaaattcaaaaata
gatctcttccttatacctaataaaatggtctacaccactgtaactccttgtggaaaaatt
caactgaacaaagagcagctgcataaaggaaaattattccaagaattcttcttcaacggt
atatttggtagattgtttcatggttcccgaacgagtgaactgcaaagggaatttattttc
agaaaaggccatgaaatacaatggagctcagacaacatgtacttacttttgcctttgaag
cattcttcctatatacagcgtgatctaaacataccgtgggaagctgttgaatcttgctct
gatgcagtggagcagttgagaaatttgtatatggaagacggaaatctcagttatgaaaag
ttaagtccaaacaaaataaacgagggagaagaaatcattcatctggccaacagatctctt
catttttctagggtcaaagattcagttgtgttatctcttcacactgggaggatctattct
gttcttgacttgattttagacacaactgcagatgattcattcgatgagatgtataatggg
aaagcttcaccattttcttcattcgtggattactaccatcaaaagtatggtattgttatt
caacaccaaggacaacctttgttgctgttaaagcaaagccacaatgcacacaatctactt
ttttcaaaattgaagtacacagatggttcaactggcaatcctctgctcttggagaaagag
caaattcatgcccgagtgccacctgaactactcatccacattgatgtcacaactgatatt
ctcaaatcattttatttactcccttctgtaatgcatcggcttcagtctttaatgctagcc
agtcagcttcgcagcgacattggttgcactcaacacataccgagtagtttgatattggag
gctattacaactttaaggtgctgcgagacattttctcttgagcggctggagttattagga
gactcagtactgaaatatgtaataggatgtgacctgttcctaaggtatccaatgaaacat
gaaggtcatctctccgatatgagatcaacagccgtatgcaatgcaacacttcataaacat
ggaatatggcgatccttgcagggttatgtacgtgatagtgcattcgacccacgtcgttgg
gttgcccctggacagatatcattgcgcccttgtccttgtacctgcggagtcgagactgca
tttgttccttttagtggaagatatatcagagacgatccatcttttgttgtgggaaaacct
tgtgacagaggtcacagatggatgtgctcgaaaacagtatctgattgtgttgaagcacta
gttggagcatattatgttggtggtggcatcgctgctgcactttgggttatgcagtggttt
ggtattgatatcagatgtgatatgaaactagtgcaggaagtgaaatctaatgcatctcgt
ctgtgctatttatcaaaatttaaagatatcgaggaactggaagcaaaactgaagtacaac
ttctcggttaagggccttctgcttgaagccataacacatccatctctgcaggaattgggg
gtcgactattgttaccagcggctggaatttcttggtgattctgtactggatctactaatc
acacggcatctatatgcttcccacactgatgttgatcctggagaattaacagacttacgt
tctgctttggtcagtaatgagaattttgcacaagcagttgtcagaaacaacatgcataat
catctacagcatggatctggaatacttttggagcaagtaacagagtatgtcagatttaat
ttggagtgcaaccagaaagagaatgaattccttcaacaagctatatgcaaagtacccaag
gttcttggagacatcatggaaagtattactggtgcaatatttatagatgtaaattttaat
gttgatctggtttggaagattgttgaaccgttgctttctccaatgattacccctgataag
cttgcattgccaccttatcgtgagttgctggagttatgtagccaccttggttgcttcata
aattcaaaatgtaccagtaaagcagaagaattaattatagagatgacggtgcagttaaaa
gatgaacttctgatagcacaagggcatgacagaaataggaagagtgcaaatgcaaaggca
gcagcccgaattttggttgacctgaagaaaaggggtctttcacttaaacaatgtttatct
aaggctaagcaattggacactgtctcctcagaactgcaatctcaattgacaagtttggaa
ttccgacatgattttccggatgtgaacggaaatcttagcctagaaggtctttcctcagtg
ggaacaacagttgttcttcctctcaaaatggataaaggtggacctcggactgcacttttt
aggctatgcaagattttgcagtggccaatgccgaaatttgaatttgtggaacaaaggttt
aggactcctattgttctggatggggttacaactacaaacttcaatagctttgtttcaacc
atcaccttgcacatacctgatgtgacagtcattacacttcaaggtgatcaacgaactgac
aagaagagttcacaggattcagcgtcgttgataatgcttgagaaactccaacaactcaag
gtctgcatgtgcaagatgtag
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integrated database retrieval system
