KEGG   Setaria italica (foxtail millet): 111258143
Entry
111258143         CDS       T02818                                 
Name
(RefSeq) UBP1-associated protein 2B-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
sita  Setaria italica (foxtail millet)
Pathway
sita03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sita00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111258143
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sita03019]
    111258143
   03041 Spliceosome [BR:sita03041]
    111258143
Messenger RNA biogenesis [BR:sita03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     111258143
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     111258143
Spliceosome [BR:sita03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    111258143
SSDB
Motif
Pfam: RRM_1 RRM_7 CSTF2_hinge
Other DBs
NCBI-GeneID: 111258143
NCBI-ProteinID: XP_022684593
LinkDB
Position
VIII:complement(32717135..32719953)
AA seq 490 aa
MFINILLIQLLWHSKKPRSSEEPVAQGVGPTLPPFCHHTSPPPATLPAMGKRKDRAAKEQ
NPDLPLHSHPTTSTTEHKRRQRRDPVPATGSDSEPDPSPPSSPAGSVRRLIEPYSKPRLV
AILAEATASDPALRARLVAAADASPSHRRLFVHGLPPRADAAALAEAFSRFGALAECHAV
ADRGRRCRGYAFVSFASRAAARRALLDAPRVLVASRHVSAQFASAGPDRSRGCGGGAGRR
VYVTNVAPDAGAERLRAFFARFGELEGGPFGFDADTGRSRGYALFVYRAAAGAATAVAEP
YRVFEGRMLHCQLANEPARKAKAPPAPPLPAAEAPALQPMLDAIAAAGVGDLAAYARDPA
QAAALLGQNPALAAAALSSALAAAAQSPAVAAVATNPAAASALMPVAAAAGRRTRATTAA
AAVPSPVKFGVRPSGGAGLLGPYKPPAHHRRHWRLRRLLHVEDHPLRGAIDHRLSFSHVT
DIAACFCSGF
NT seq 1473 nt   +upstreamnt  +downstreamnt
atgttcattaacatcttattaatccaattgctctggcacagcaagaagccaagaagtagc
gaagagccggtagcccagggggtgggtcccacactgcctccattctgccatcacacctcg
ccgccgccggcgaccctcccggccatggggaagaggaaggacagagccgccaaggagcag
aaccccgacctccccctacattcccatcccaccacctccacgaccgagcacaagcgccgg
cagcggcgagaccccgtcccggcaaccggctccgactccgagccggacccctcgccgccg
tcctcgccggcgggatccgtgcggcgcctgatcgagccctactcgaagccccgcctcgtc
gccatcctagcggaggcgaccgcgtccgaccccgcgctgcgcgcccgcctcgtcgccgcc
gccgacgcgtccccgtcccaccgccggctcttcgtccacggccttcccccgcgcgccgat
gccgccgcgctcgcggaggcgttctcccgcttcggggccctcgccgaatgccacgccgtc
gcggaccgcgggcggcggtgcagagggtacgccttcgtgtccttcgcctcccgcgccgcc
gcccgccgcgccctcctggacgccccgcgcgtcctcgtcgccagccgccacgtctcggcg
cagttcgcctcggccggccccgaccggtcccgcgggtgcggtggcggcgccgggaggcgg
gtgtacgtgaccaacgtcgcgccggacgccggcgcggagcgcctgcgcgcgttcttcgcg
cggttcggggagctcgagggcgggccgttcggcttcgacgccgacacgggcaggtcccgc
gggtacgcgctgttcgtgtaccgcgcggcggccggcgccgcgacggcggtggcagagccg
taccgcgtgttcgaggggcgcatgctgcattgccagctcgccaatgaacccgcgcggaag
gccaaggcacccccggcgccgccgctaccggcggcagaggcgcccgcgttgcagccgatg
cttgatgccatagcggccgccggcgtgggggaccttgcagcctacgcgcgggacccggcg
caggctgcggcattgctcgggcagaacccggcgcttgcagctgcggcattgagctctgca
ttggcggctgctgcacagagtccggcagtggctgctgttgccacaaatccggctgctgcg
tctgcactgatgccagtagctgcggccgcaggaagacggacaagggcaacgaccgcagca
gcggcggtgccatcgccggtgaagtttggtgttcgaccaagcggcggcgcagggctgctt
gggccatacaagccaccagcccaccatcgtcgccattggcgtctgcggcggctgctgcac
gtggaggatcatccactgcggggagccattgaccaccgactttcgttcagtcatgtaact
gacattgcagcgtgcttttgtagtggcttttag

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