Setaria italica (foxtail millet): 19526770
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Entry
19526770 CDS
T02818
Symbol
rpoC1, W841_p071
Name
(RefSeq) RNA polymerase beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
19526770 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sita03021
]
19526770 (rpoC1)
03400 DNA repair and recombination proteins [BR:
sita03400
]
19526770 (rpoC1)
Enzymes [BR:
sita01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
19526770 (rpoC1)
Transcription machinery [BR:
sita03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
19526770 (rpoC1)
DNA repair and recombination proteins [BR:
sita03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
19526770 (rpoC1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Motif
Other DBs
NCBI-GeneID:
19526770
NCBI-ProteinID:
YP_008815742
UniProt:
U5TU16
LinkDB
All DBs
Position
Pltd:23226..25277
Genome browser
AA seq
683 aa
AA seq
DB search
MIDQYKHKQLQIGLVSPQQIRAWAKKILPNGEVVGEVTRPSTFHYKTDKPEKDGLFCERI
FGPIKSGICACGNSRASVAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
GLPSYIANLLDKPLKKLEGLVYGDFSFARPSAKKPTFLRLRGLFEDEISSCNHSISPFFS
TPGFATFRNREIATGAGAIREQLADLDLRIIIENSLVEWKELEDEGYSGDEWEDRKRRIR
KVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKRVI
RRNNNLAYLLKRSELAPADLVMCQEKLVQEAVDTLLDSGSRGQPTRDGHNKVYKSLSDVI
EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIAIKLFQLFVIRDLITKRAT
SNVRIAKRKIWEKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTICLHP
LVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPICVPTQDMLIGLY
VLTIGNRRGICANRYNSCGNSPNKKVNYNNNNYYKYTKDKEPHFSSSYDALGAYRQKRIG
LNSPLWLRWKLDQRVVGSREVPIEVQYESFGTYHEIYAHYLVVGNRKKEIRSIYIRTTLG
HISFYREIEEAIQGFSRAYSYTI
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgattgaccaatataaacataaacaacttcaaattggactcgtttcccctcaacaaata
agggcttgggctaaaaaaatcctacctaatggggaagtcgttggcgaagtcacaaggccc
tccacttttcattataaaaccgataaaccagaaaaagatggattgttttgcgaaagaatc
tttggacccataaaaagcggaatttgtgcttgtggaaattctcgagcgagcgtagctgaa
aacgaagacgaaagattttgtcaaaaatgtggggtagaatttgttgattctcggatacga
agatatcaaatgggctacataaaactggcatgtccagtgactcatgtgtggtatttgaaa
ggtcttcctagttatatcgcgaatcttttagataaaccccttaagaaattggagggccta
gtatatggcgatttctcttttgctaggcccagcgctaaaaaacctactttcttacgatta
cggggtttattcgaagatgaaatttcatcctgtaaccacagtatttctccctttttttct
accccaggctttgcaacatttcgaaatcgggaaattgcgacaggagcaggtgctattaga
gaacaattagcagatttagatttgcgaattattatagagaattccttggttgaatggaaa
gaattagaagacgaggggtatagtggagatgaatgggaagatagaaaaagacgaataaga
aaagtttttttgattagacgcatgcaattggcgaaacattttattcaaacaaatgtagaa
ccagaatggatggttttgtgcttattaccggttcttcctcccgaattgagacccattgtt
tataggtctggggataaagtagtgacttcggatattaatgaactttataagagagttatc
cgtcggaacaacaaccttgcctatctattaaaaagaagtgaattagcaccagcagattta
gtaatgtgtcaggaaaaattggtacaagaagccgtggatacacttcttgatagtgggtcc
cgcgggcaaccgacaagggatggtcacaataaagtatacaaatcactttcagatgtaatt
gagggtaaagaggggaggtttcgcgagactctgcttgggaaacgggtcgattactcgggg
cgttctgtcattgttgtgggtccttcgctttcattacatcaatgtggattacctctagag
atagcaataaagctttttcagctatttgtaattcgcgatttaatcacgaaacgtgctact
tctaatgtcaggattgctaaaaggaaaatttgggaaaaggaacccattgtatgggaaata
cttcaagaagttatgcggggacatcctgtactgttgaacagagcacctaccctgcataga
ttaggcatacaggccttccaacccactttagtagaggggcgtactatttgcttacatcca
ttagtgtgtaagggtttcaatgcggactttgatggggatcaaatggctgttcatctacct
ttatccttggaagctcaggcggaagcccgtttactcatgttttctcatatgaatctcctg
tctcccgctattggagatcctatttgcgtgccaacccaagacatgcttatcggactttat
gtattaacgattggaaaccgtcgaggtatttgtgcaaatagatataatagttgcggaaac
tctccaaataaaaaagtaaactacaataataacaattattataagtatacgaaagataaa
gaaccccatttttctagttcctatgatgcactgggagcttatagacagaaacgaatcggt
ttaaacagtcccttgtggctccgatggaaactagatcaacgcgtcgttgggtcaagagaa
gttccgattgaagttcaatatgaatcttttgggacttatcatgagatttatgcccactat
ctggtagtgggaaatagaaaaaaggaaatccgttctatatacattcgaaccactcttggt
catatttctttttatagagaaatagaggaagccatacaaggatttagtcgggcctattca
tacactatctaa
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