Setaria italica (foxtail millet): 19526820
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Entry
19526820 CDS
T02818
Symbol
rpoA, W841_p032
Name
(RefSeq) RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
19526820 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sita03021
]
19526820 (rpoA)
03400 DNA repair and recombination proteins [BR:
sita03400
]
19526820 (rpoA)
Enzymes [BR:
sita01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
19526820 (rpoA)
Transcription machinery [BR:
sita03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
19526820 (rpoA)
DNA repair and recombination proteins [BR:
sita03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
19526820 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-GeneID:
19526820
NCBI-ProteinID:
YP_008815782
UniProt:
U5TU61
LinkDB
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Position
Pltd:complement(73520..74539)
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AA seq
339 aa
AA seq
DB search
MVREEVTGSTQTLEWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT
CITRAKFGNVPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD
IILPPSVEIVDTTQPIANLREPIDFYIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVR
NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE
ENKNRFTPPLLTFQKRFTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS
KTEEDLMRIESFRMEDGKLIWDTLEKHLPIDLLKNKFSL
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atggttcgagaggaggtaacaggatccacccaaacactagagtggaagtgtgttgaatca
agagtagatagtaagcgtctttattatggtcgtttcattctgtccccgcttagaaaaggt
caagcggatactgtcggtattgccttgcgaagagctttacttggagaaatagaaggaacg
tgtatcacacgcgccaaatttgggaacgtgccacacgaatattctacaatagtaggtatt
gaagaatccatacaagaaattttactaaatttgaaagaaattgtattgagaagtaatctc
tatggagttagagacgcatcaatttgcgtcaaaggtcctagatacataaccgctcaagat
ataatcttaccgccttccgtagaaatcgttgatacgacacaacctatagctaacttgaga
gagccgattgatttctatattgagttacagatcaagagagatcgcggatatcatacggaa
ctcagaaagaactctcaagatggaagttatcctatagatgctgtatccatgcctgttcga
aatgtgaattatagtattttttcttgtgggaatggaaatgaaaaacatgagatacttttt
ctagaaatatggacgaatggaagtttaactcctaaagaagcgctttatgaagcttctcgt
aatttgattgatttatttcttccttttctacacgcagaggaagagggcactagtttcgaa
gaaaataaaaacagatttactccaccccttttaacctttcaaaaaagattcactaatcta
aagaaaaacaaaaaaggaattccattgaattgtatttttattgatcaattagaattgcct
tctagaacgtataattgtctcaaaagggccaatatacatacactattggaccttttgagt
aagactgaagaggatcttatgcgaattgaaagttttcgtatggaagatggaaaacttata
tgggacactctcgagaagcatctcccaattgatttacttaagaacaagttctcgctttaa
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