Streptococcus intermedius C270: SII_0423
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Entry
SII_0423 CDS
T02831
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
siu
Streptococcus intermedius C270
Pathway
siu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
siu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SII_0423 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
siu03019
]
SII_0423 (deaD)
03009 Ribosome biogenesis [BR:
siu03009
]
SII_0423 (deaD)
Enzymes [BR:
siu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SII_0423 (deaD)
Messenger RNA biogenesis [BR:
siu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SII_0423 (deaD)
Ribosome biogenesis [BR:
siu03009
]
Prokaryotic type
rRNA helicases
SII_0423 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGU77612
LinkDB
All DBs
Position
410856..412400
Genome browser
AA seq
514 aa
AA seq
DB search
MKFNKFHLSAELLAEVEKAGFVEASPIQEQTIPLAMEGKDVIGQAQTGTGKTAAFGFPTL
EKINTENPFIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGA
HIVVGTPGRLLDLIKRKALKLNHVEILILDEADEMLNMGFLEDIEAIISRVPEERQTLLF
SATMPDAIKRIGVKFMKDPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPE
LSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIESLTKK
RMKGMKPASAEEAFQAKKKVALKKIERDFADEAIRSNFEKFGKDARKLAAKFTPEELALY
ILSLTVQDPDTLPEVEIAREKPLPFKYVSGANKGNRNHKGGNRRDRGNRRDNYKKGARNE
HFDKEKRYRKDHKKPRNTSSEKKTGFVIRNKGDK
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttaataaattccatttatctgctgaattgttagcagaggttgaaaaagctggc
tttgttgaagccagcccaatccaagaacaaacaatcccgcttgctatggagggaaaagat
gtgattggacaagcgcagactggtacaggaaagacagctgcttttggttttccaactctt
gaaaaaattaacacagaaaatccctttatccaagcgttagttattgcaccaactcgtgag
ttagctgttcaaagtcaggaagagctctttcgctttggccgtagtaaaggagtgaaagtt
cgatcagtttatggtggctctagcattgaaaagcaaattaaagccttgaaatcaggcgcc
cacattgtcgtaggaaccccagggcgtttattagacctcattaagcgcaaggcgttgaaa
ctcaatcatgtagaaattcttattttggatgaagcagacgaaatgctcaatatgggcttc
ttagaagacattgaagcaatcatctcacgcgtaccagaagaacgccaaaccttgctcttt
tctgcgacgatgccagatgctatcaagcggattggtgtgaagtttatgaaagatccaaca
catgtcaagattgcagcaaaagaattgacaacggagctggtggatcaatattatattcgc
gtaaaggaaaatgaaaaatttgataccatgacacgcctgatggatgtggagcagcctgag
ctgtctatcgtctttggtcggaccaagcgacgggtggatgagctgactcgtgggcttaaa
ctccgtggtttccgagcagagggtatccatggtgatttggaccaaggcaagcgcctccgc
gtcctccgagactttaaaaacggcaatctggatgtcttggttgcgacagatgtagctgca
cgtggattagatatttctggtgttacccatgtttacaattacgatattccacaagacccc
gaaagttatgttcatcgtatcggacggacaggtcgtgctggtaaatctggtcagtctatt
acatttgtagcgccaaatgaaatgggttatcttcaaatcattgaaagcttaaccaaaaaa
cgtatgaaaggtatgaagccagcatctgcagaagaagcttttcaagctaagaaaaaagtt
gcactcaaaaagattgaacgagattttgcagatgaagctattcgtagtaattttgaaaaa
tttggtaaggatgctcgtaagctagcggctaaatttacaccggaagaattagccttatat
attttgagtctgacagtacaggatccagatactcttccagaagtggaaattgcgcgcgaa
aaaccactaccgtttaaatatgtttctggtgccaataagggaaatcggaatcataaaggt
ggtaatcgtcgtgatcgtggtaatagacgcgataattacaaaaaaggagctcgcaatgag
cattttgacaaggaaaaacgctaccgtaaagatcacaaaaaacctcgcaatacttcaagc
gaaaagaaaactggctttgtgattcggaataaaggggataaataa
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