Streptococcus intermedius C270: SII_0513
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Entry
SII_0513 CDS
T02831
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
siu
Streptococcus intermedius C270
Pathway
siu03410
Base excision repair
siu03430
Mismatch repair
siu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
siu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SII_0513 (recJ)
03430 Mismatch repair
SII_0513 (recJ)
03440 Homologous recombination
SII_0513 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
siu03400
]
SII_0513 (recJ)
DNA repair and recombination proteins [BR:
siu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SII_0513 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SII_0513 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SII_0513 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
PGM_PMM_II
Toprim
DUF5760
AlaDh_PNT_C
AAA_assoc_C
Motif
Other DBs
NCBI-ProteinID:
AGU77700
LinkDB
All DBs
Position
516728..518962
Genome browser
AA seq
744 aa
AA seq
DB search
MITSKYDWQIATNFSDEGFIKQAQKLGLEPSVANLVYQRGIQTEEALRDFLEASLDKLHD
PYELHDMEKAVVRIRQAIENYEQILIYGDYDADGMTSASIAKEALEQLGAECQVYLPNRF
TDGYGPNASVYKYFIENQEVSLIITVDNGVAGHEAIELAQSMGVDVIVTDHHSMPEELPN
AYAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQIELLDLVAIGTIADMVSLTGENR
ILVKYGLSILKNTQRIGLQELFKISGIQEDEVDEEIVGFQIAPRLNALGRLDDPNPAIEL
LTGFDEEEARDIALMINQKNDERKEMVQHIYDEAKFMIDPKKPVQVLAGKGWNPGVLGIV
AGRLLEELHQPIIVLNIENGLAKGSARSIEAVDIFEALDPHRELFVAFGGHAGAAGMTLD
ASRLEELSQVLTAYIENNQLDLSTKNDLFLDEELALPDLTLETLKNFEKLAPFGIDNKKP
VFYLKDFKVENARTMGAGNAHLKLKISQADVAFDVIAFGQGELATEFSQTKNLELAVTLS
VNKWNGQTSLQLVLVDARVNGIQLFNIRGKNARLPENVPILRFSEEMPDLGNSRSVVVYD
VPNQLEQLKMIIQQGHFEAIYFKNEIVHPYYLTGFGTRAQFAKLYKTIYQFPEFDIRYKL
KKLAAYLNIDSILLIKMIQIFEELGFVTVQDGVMRVNKEAEKKAIESSYIYQELKKMVKE
QELMALGTVQEIYDYLMEKDECSN
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgattacatcaaaatatgattggcaaattgctacaaatttttcagatgagggctttatc
aaacaagctcaaaaactcggcttggaaccttcggtagccaatttggtataccagagaggg
attcagacagaagaagcactgcgagactttctagaagctagtttggacaagctacacgat
ccttatgaacttcatgatatggagaaggcggtagtacgcattcgtcaagcgattgaaaac
tatgagcagattttgatctatggcgattatgatgcagatgggatgacttcagcttctatt
gctaaagaagcgttagaacaattgggagcggagtgtcaagtctatttacccaatcgattt
acagatggttatggacctaatgctagtgtttacaagtattttattgaaaatcaagaagtc
tcactcattattacagtggataatggtgttgcaggacatgaagcaattgagttagctcag
tccatgggagtggatgtcatcgtaacagatcaccactctatgcccgaggagctgccaaat
gcctatgctatcgtccatccggaacatagcggagcagattaccctttcaagcatctggct
ggctgtggggtggcttttaagttagcgactgcccttttagaggaagtgcagattgagttg
ttggatctagtcgctatcggcactattgcggatatggtcagcttgacaggtgagaatcgg
attttggtcaaatatggcttatctattttgaaaaacactcagcgcatcggcttgcaagaa
ctttttaagatttcgggcattcaggaagatgaagtagatgaagaaatagttggttttcag
atagctcctagactcaatgctctaggtcgattggatgatccaaatcctgctattgaactt
ctgactggttttgatgaagaagaagcgcgtgacatcgccctgatgattaatcaaaaaaat
gacgaacgcaaggagatggtgcagcatatctatgatgaagctaagtttatgattgatcct
aagaagcctgttcaggttctagctggcaagggttggaatccaggtgttttgggaattgta
gcagggcgacttttagaagagttgcatcagccgatcatcgtgctgaatattgaaaatggt
ttagcaaaaggtagtgctcgcagcattgaagcagttgatatttttgaagctctagatcct
caccgagagttatttgtagcttttggtgggcatgctggggcagctggcatgactcttgac
gccagtcgattagaagaactcagtcaggttttgacggcctatattgaaaataatcagctg
gatttgtctactaagaatgacctttttttggatgaagaactagctttgccagatctgacg
ctggaaactcttaaaaactttgaaaaacttgctccttttggtatagataataaaaaacct
gttttctatttaaaagattttaaagttgaaaatgctcgtaccatgggggcaggaaatgct
cacctgaaactaaaaatttctcaggctgatgttgcttttgatgtaatagcttttggacaa
ggcgaacttgccacagaattttctcaaactaaaaatttagagttagcagtgactctgtcg
gtcaacaaatggaatggtcagactagtctgcaacttgtgttggtagatgctcgagtcaac
ggaattcagctctttaatattcgaggtaaaaatgctcgcttacctgaaaatgtacctatt
ctgcgtttttcagaagaaatgcctgatttgggaaatagtagatcagttgtggtctatgac
gtccccaatcaactagaacaactaaaaatgattattcaacaaggacattttgaagccatt
tactttaaaaatgagattgttcacccctattatctgacaggttttggaacgagagcccaa
tttgccaaactctataaaacgatttatcagtttccggagtttgatatacgttataaacta
aaaaagttggctgcttatctcaacattgattcaattctactcataaagatgattcaaatt
tttgaagaactgggttttgtaacggttcaagatggagtgatgcgagttaacaaggaagca
gaaaaaaaggctattgagagtagctatatttatcaagaactcaaaaaaatggtcaaggag
caggagctgatggctctaggaactgttcaagaaatttatgattatctgatggaaaaggat
gaatgttcaaactag
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