Solibacillus silvestris StLB046: SSIL_0411
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Entry
SSIL_0411 CDS
T02162
Name
(GenBank) superfamily II DNA and RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
siv
Solibacillus silvestris StLB046
Pathway
siv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
siv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SSIL_0411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
siv03019
]
SSIL_0411
03009 Ribosome biogenesis [BR:
siv03009
]
SSIL_0411
Enzymes [BR:
siv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SSIL_0411
Messenger RNA biogenesis [BR:
siv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SSIL_0411
Ribosome biogenesis [BR:
siv03009
]
Prokaryotic type
rRNA helicases
SSIL_0411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
NDK
Motif
Other DBs
NCBI-ProteinID:
BAK14834
UniProt:
F2F6E0
LinkDB
All DBs
Position
450570..452123
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AA seq
517 aa
AA seq
DB search
MTNFSELNISESTLRSIKRMGFEEATPIQEGTVTFAMAGRDVLGQAQTGTGKTAAFGIPL
IEKIDPKNPNIQALVIAPTRELAIQVSEELYKLGYDKRVKLLSVYGGQEIGRQIRALKNK
PQIIVGTPGRIQDHINRRTLRLDEVQTLVLDEADEMLNMGFIDDINAILENVPSDRQTLL
FSATMPPAIRKIAETFMKDPEIVKIKAKELTMENIEQFFVKATEREKFDALSRLLDSQKP
ELAIIFGRTKRRVDELSQALGLRGFLAEGIHGDLSQAKRISVLRQFKEGKIDILIATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGVAVTFVTPREMGYLRIVEETTK
KRMTPLRPPSSEEALVGLQEDAMQSLVELVQNNDLGTYRELAAKLLENNDALDLVAAALK
SITKEPDATPVSLSEERPLPMRRDRSQGGGGRGRGGNDRNRGGGNRGGGDRRGGDRRREG
GGGGSRSGSGSRDGGRREGGARREGSRDRRPRPRRED
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttttcagaattaaacattagtgaatcgacattacgttctattaagcgtatg
gggtttgaagaagcaacaccaatccaagaaggaacagttacgtttgcaatggctggccgt
gatgttttaggccaagcacaaacaggtactggtaaaacagctgcatttggtattccttta
atcgagaaaatcgatccaaaaaatccaaatatccaagctttggtaattgctccgactcgc
gaattagcaatccaagtttcagaagaactttataaattaggttatgacaagcgcgtaaaa
ttattatcagtttacggaggtcaagaaattggccgtcaaatccgcgcattaaaaaacaaa
cctcaaattattgtaggtacaccgggtcgtattcaagaccatattaaccgtcgtacatta
cgtttagacgaagtgcaaactttagttttagacgaagcggacgaaatgttaaacatgggc
ttcatcgatgatattaatgcgattttagaaaacgtaccatcagatcgccaaacattacta
ttctcagcgacaatgcctccagcaatccgtaaaattgcagagacattcatgaaagatcct
gaaatcgtaaaaattaaagcgaaagaattaacaatggaaaacattgaacaattcttcgta
aaagcaacagagcgcgaaaaattcgatgctttatctcgtctattggattcacaaaaacca
gaattagcaattatcttcggtcgtacgaaacgccgtgttgatgagttaagccaagcttta
ggtttacgtggcttcttagcggaaggtatccacggtgatttatctcaagcgaaacgtatt
tctgttttacgtcagtttaaagaaggtaaaatcgatattttaatcgcaacagacgttgca
gctcgtggattggatatttcaggtgtaacgcatgtttacaactttgacattccacaagat
ccagaatcatacgttcaccgtattggtcgtacaggccgtgcaggtaaatctggtgttgca
gtaactttcgtaacacctcgtgaaatgggttacttacgcatcgtagaagaaactacgaaa
aaacgtatgactcctttacgtccaccatcatctgaagaagcattagtaggcttacaagaa
gatgcaatgcaatcattggtggaattagttcaaaataatgatttaggtacttaccgtgag
ttagcagctaagttattggaaaataacgatgcacttgacttagtagcagctgctcttaaa
tcaattactaaagaacctgatgctacaccagtatcattatcggaagagcgtccactacca
atgcgtcgtgaccgttcacaaggtggcggaggccgtggtcgtggcggtaatgaccgtaac
cgtggtggtggaaaccgtggcggtggtgaccgtcgcggaggagatcgtcgtcgtgaaggt
ggcggaggcggaagccgttctggtagcggaagtcgtgatggaggtcgtcgtgaaggcggt
gctcgtcgcgaaggttctcgtgatcgtcgtccacgtccacgtcgtgaagactaa
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