Solibacillus silvestris StLB046: SSIL_2118
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Entry
SSIL_2118 CDS
T02162
Name
(GenBank) superfamily II DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
siv
Solibacillus silvestris StLB046
Pathway
siv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
siv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SSIL_2118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
siv03019
]
SSIL_2118
03400 DNA repair and recombination proteins [BR:
siv03400
]
SSIL_2118
Enzymes [BR:
siv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SSIL_2118
Messenger RNA biogenesis [BR:
siv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SSIL_2118
DNA repair and recombination proteins [BR:
siv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SSIL_2118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAK16541
UniProt:
F2F5K8
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All DBs
Position
2189831..2191594
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AA seq
587 aa
AA seq
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MISLALQHLKTNFGYDSFRPGQTQIIDNVLNNNDTLVIMPTGGGKSLCYQIPALCMEGTT
LVISPLISLMKDQVDMLVSSGISAAYINSSLSYEEVQNVMYGVQSGKIKLLYIAPERLEN
ERFCNELAQINVPLLAIDEAHCISQWGHDFRPSYRSIQQLLHLWDKKPTVIALTATATEE
VSADIQQLLSIEKENTFITGFARENLSFSVLLGENKEAYIKKYVKANENEAGIIYAATRK
SVESVYEMLNKAGFAAGKYHGGMFEEDRTYEQNRFLNDEVQIMVATNAFGMGINKTNVRY
VLHYNMPRNMESYYQEAGRAGRDGLDSECILLYSSSDEQTQRFLIDQAQDRSRIPFELQK
LHAMIDYCHTERCLQSYIIEYFGDEAGQDCGRCANCTDNRPQLDVTTDAQKVLSCIVRMG
QKFGKQLTASVLAGSRSKKVLEFNFQKLPTYGILRAMNAKEIANFIEFLISEKLIVVNNG
QFPTLSISDSGKEVLLGQKKVLRKEARIIESTVEPNDPLFEVLRKIRKEIADHEKVPPFV
VFSDKSLKDMCVRKPKNSTQFLEVSGVGESKLEKYGKTFIEAIIANS
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgatttcactagcattacaacatttaaaaacaaattttggttatgactcttttcgtcct
ggtcaaactcaaattattgataatgtattaaataataacgatacgcttgttattatgcct
acaggcggcggtaaatccctttgctatcagattccagcactatgtatggaaggaacgaca
cttgttatttcaccactgatttctcttatgaaagaccaggttgatatgcttgtatccagc
ggaatttcagcggcttatataaatagttcgctcagttatgaagaagtgcaaaatgttatg
tatggggtgcaaagcggaaaaattaagttgctgtacattgcaccggaacgacttgaaaat
gagcgcttttgcaatgaactagcacaaataaatgtaccattattagccattgatgaagcc
cattgtatatcacagtgggggcatgattttcgtccaagttaccgttcaattcagcaactg
ctacatttatgggataagaaaccaaccgttattgcattgactgcaacagctactgaagag
gtgagtgccgacattcaacagcttctttccattgaaaaggaaaatacattcattaccggc
tttgcacgtgaaaatttatcgttttctgttttgcttggagaaaacaaagaagcctatata
aaaaaatatgtaaaggcaaatgaaaatgaagcgggtattatttacgcggcaactcgaaaa
tcggtggaatcggtctatgaaatgctgaataaagcaggatttgcagcaggaaaataccat
ggcgggatgttcgaggaagatcgtacatatgaacaaaatcgctttttaaatgatgaagtt
caaataatggtcgcaacaaatgcttttggaatgggaatcaacaaaacaaatgtgcgctat
gtgcttcattataatatgcctcgtaatatggaaagctattatcaggaggcaggccgtgca
ggacgtgatggactggacagtgaatgtatattactttacagctcttccgacgaacaaacg
cagcgttttttaatcgatcaggcgcaagatcgctcccgtattccttttgaactgcaaaag
ctgcatgccatgattgattactgtcatacagagcgttgtctacaaagttatattatcgaa
tattttggagacgaggcagggcaagattgcggcagatgtgcaaattgtacagataaccgt
ccgcaactggatgtgacaactgatgcccaaaaagtattatcctgtatcgttagaatgggg
caaaaattcgggaagcagctaacagcttcagtattagcagggtcgcgcagcaaaaaagtg
cttgaattcaacttccaaaagttgccgacatatggcattttacgggcaatgaatgcgaaa
gaaatcgccaatttcatcgaatttttaatttcagaaaaactgattgttgtaaataatgga
cagttccctacgttatccatttctgattcgggaaaagaagtattacttgggcaaaaaaag
gtattacgtaaggaagcacggattatcgaatcaaccgtcgagcctaatgatccactattt
gaagtgcttcgtaaaatacggaaagaaattgccgaccatgagaaagtgcctccatttgtt
gttttttcggataaatcattaaaagatatgtgtgtacgaaaacctaaaaacagcactcaa
tttttagaggttagcggtgttggggaaagtaaactggaaaagtacgggaaaacctttatt
gaggcgattattgcaaattcataa
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