Stappia indica: GH266_04850
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Entry
GH266_04850 CDS
T06350
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
siw
Stappia indica
Pathway
siw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
siw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GH266_04850 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
siw03021
]
GH266_04850 (rpoC)
03400 DNA repair and recombination proteins [BR:
siw03400
]
GH266_04850 (rpoC)
Enzymes [BR:
siw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GH266_04850 (rpoC)
Transcription machinery [BR:
siw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GH266_04850 (rpoC)
DNA repair and recombination proteins [BR:
siw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GH266_04850 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RnfC_N
DUF7567
Motif
Other DBs
NCBI-ProteinID:
QGZ33898
UniProt:
A0A857C4U1
LinkDB
All DBs
Position
complement(1025528..1029727)
Genome browser
AA seq
1399 aa
AA seq
DB search
MNHEVMNLFNQQAPAQTFDHIKISIASPEKIMSWSYGEIKKPETINYRTFKPERDGLFCA
RVFGPIKDYECLCGKYKRMKYKGVICEKCNVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERVLYFEYYVVLEPGLTPLKQNQLLSEEDFLRAQDEYGEDAFTA
MIGAEAIREMLMSLDLEKERDQIRKEISEATTELKPKKLAKRLKVVEAFIESGNRPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLMELRAPDIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVITVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGFSSTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARTLMMSTNNILHPANGSPIIVPSQDIVLGLYYLSLIADGEPGEGMVFGNIGELHHALE
TKSVTLHAKIRGRVRAIDAEGNTSNRIVETTPGRMLIGELLPLHHEVPYDVCNKLMTKKD
ISRMIDAVYRACGQKETVIFCDRIMGLGFSHACRAGISFGKDDMVIPETKAGLVDETATL
VKEYEQQYNDGLITQGEKYNKVVDAWAKCTDRVADEMMKRIQAVQRDEETGRQKQINSIY
MMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDSIILETDCGSENGITIQAIVDAGQVIASLGHRVLGRT
AAEDVLNHATGELIVPRGTLIEEKDVEAIEAANVQMIKIRSVLTCETKRGVCATCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVVDQSFIESNFEGTVRIRNRN
AVRDSDGNLVAMARNMAVVIIDADDNERAVHRIAYGSKLHVDEGDTVKRGQRIAEWDPYT
RPMLSEVDGVVDSEDLVEGVSVQETTDEATGITKRVVMDWRTSQRGNDLKPAIVIKDSTG
SIKKLPRGGDARSLLSVDAILSVQIGAEVQAGDVLARIPLESARTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRFGRDYKNKRRIIIEPHEEGADPVEYLIPKGKHFHLQEGDTIE
KGEYILDGNPAPHDILAIRGVEALAAYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKIE
INDPGDTELLSGEHVDRLDLDEINDRAIDDARKPASGVPVLLGITKASLQTRSFISAASF
QETTRVLTEAAVNGKQDELEGLKENVIVGRLIPAGTGGMMTRIREIAQHRDDLILEARKA
SSTIDQADGMLEDLTGAGE
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatgaggtcatgaacctgttcaaccagcaggctcccgcccagaccttcgaccac
atcaagatctcgatcgctagccccgagaagatcatgtcgtggtcctacggcgaaatcaaa
aagccggagacgatcaactaccgtacgttcaagccggaacgggatggcctgttctgtgcg
cgcgtgttcggtccgatcaaggactacgagtgcctttgcggcaagtacaagcggatgaag
tacaagggcgtcatctgcgagaagtgcaacgtcgaggtcaccctgtcccgcgtccgccgc
gagcgcatgggtcatatcgagcttgccgctccggttgcgcatatctggtttctgaagtcg
ctgccctcgcgcatcggccttctgctggacatgacgctgaaggatctcgagcgcgtcctg
tacttcgagtactacgtggtgctggagccgggcctgacgccgctgaagcagaaccagctt
ctgtcggaagaggacttcctgcgcgcccaggacgagtacggcgaggacgccttcacggcg
atgatcggcgcggaagccatccgcgagatgctgatgtcgctcgacctggagaaggagcgc
gaccagatccgcaaggagatctccgaggcgacgaccgagctgaagccgaagaagctggcc
aagcgtctcaaggtggtcgaggccttcatcgagtccggcaatcgcccggaatggatgatc
ctcaccgtggtcccggtcatcccgccggacctgcgtccgctggttccgctggacggcggc
cgcttcgcgacctccgacctcaacgacctgtatcgccgcgtcatcaaccgcaacaaccgt
ctgcggcgcctgatggagctgcgtgcgccggacatcatcatccgcaacgagaagcgcatg
cttcaggagtcggttgatgcgctgttcgacaacggccgtcgcggccgcgtcatcacgggt
gccaacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttc
cgtcagaacctgctcggcaagcgcgtcgactattccggccgttcggtgatcaccgtgggt
ccggagctgaagctgcatcagtgcggcctgccgaagaagatggcgctggagctgttcaag
ccgttcatctactcccgcctcgacgccaagggcttctcctccacggtgaagcaggcgaag
aagctggtggagaaggagcgtccggaagtctgggatatcctcgacgaggtcatccgcgag
catccggtcctgctgaaccgcgcaccgaccctgcaccgtctcggcatccaggcgttcgag
ccgacgctgatcgaaggcaaggcgatccagctgcacccgctcgtctgcgcggcgttcaac
gccgacttcgacggtgaccagatggccgtgcacgtgccgctctcgctggaagcccagctg
gaagcgcgcacgctgatgatgtcgaccaacaacatcctgcatccggccaacggttcgccg
atcatcgtgccgtcgcaggacatcgtcctcggcctctactacctgtcgctgattgccgac
ggggagccgggcgagggcatggtgttcggcaatatcggcgagctgcatcacgcgctcgag
acgaagtccgtgaccctgcatgcgaagatccgcggccgcgtccgcgccatcgacgccgag
ggcaacacgtccaaccggatcgtggagaccacgccgggccgcatgctgatcggcgagctc
ctgccgctgcatcacgaagtgccgtacgacgtctgcaacaagctgatgaccaagaaggac
atcagccgcatgatcgacgcggtgtaccgtgcctgcggccagaaggagaccgtgatcttc
tgcgaccgcatcatgggtctgggcttcagccatgcctgccgtgccggcatctcgttcggc
aaggacgacatggtgattccggagacgaaggccggcctggtcgacgagaccgcgaccctc
gtgaaggaatacgagcagcagtacaacgacggcctgatcacccagggcgagaagtacaac
aaggtcgtcgacgcgtgggccaagtgcaccgaccgcgtcgccgacgagatgatgaagcgc
attcaggcggtccagcgcgacgaggagaccgggcgtcagaagcagatcaactcgatctac
atgatgtcccactccggcgcccgtggcagccccgcgcagatgaagcagcttgccggcatg
cgtggcctcatggccaagccgtcgggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgtcggtgctggagtacttcaactccacgcacggtgcccgtaagggtctg
gccgacaccgcgctgaagacggcgaactcgggttacctgacccgtcgtctcgtcgacgtg
gcgcaggactcgatcattctggagacggattgcggttcggagaacggcatcaccatccag
gcgatcgtcgatgccggccaggtcatcgcctcgctcggtcatcgcgtgctgggccgtacc
gcggccgaggacgtgctgaaccatgcgaccggcgagctcatcgtcccgcgcggtaccttg
atcgaggagaaggacgtcgaggccatcgaggccgcgaacgtccagatgatcaagatccgc
tcggtgctgacctgcgagaccaagcgcggcgtctgcgcgacctgctacggtcgcgacctg
gcccgcggcacgccggtgaacatgggcgaggcggtcggcgtcatcgcggcgcagtcgatc
ggcgagccgggcacccagctgaccatgcgtaccttccatatcggcggtacggcgcaggtg
gtggaccagtccttcatcgagtccaacttcgagggcacggtgcggatccgcaatcgcaac
gcggttcgcgattccgacgggaacctggtcgcaatggcccgcaacatggcggtcgtcatc
atcgacgcagacgacaacgagcgtgcggtgcaccgcatcgcctacggttcgaagctgcat
gtcgacgagggcgacacggtcaagcgcggccagcgcatcgccgagtgggatccctacacc
cgtccgatgctctccgaggtggatggcgtcgtcgactccgaagacctggtcgagggcgtg
tcggtgcaggagaccacggacgaggcgaccggtatcaccaagcgcgtggtcatggactgg
cggacgtcgcagcgcggcaacgacctgaagccggcgatcgtcatcaaggactccaccgga
tcgatcaagaagctgcctcgtggcggcgatgcccggtccctgctgtccgtcgatgcgatc
ctgtcggtgcagatcggcgccgaggtgcaggcgggtgacgtgcttgcacgtatcccgctg
gaaagcgcccgtaccaaggacattaccggcggtctgccgcgtgtggccgagctgttcgag
gcacgtcgtccgaaggatcacgcgatcatcgcggaaatcgacggtacgatccgcttcggt
cgcgactacaagaacaagcggcgcatcatcatcgagccgcacgaggaaggtgcggatccg
gtcgagtacctcatcccgaagggcaagcacttccatcttcaggaaggcgacaccatcgag
aagggcgagtacatcctcgacggcaacccggcaccgcacgacatcctggccattcgtggc
gtggaggcgctggccgcctacctcgtcaacgagatccaggaggtctaccggctgcagggc
gtggtgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaagatcgag
atcaacgatccgggcgatacggaactgctgtccggcgagcatgtcgaccgcctcgatctc
gacgagatcaacgaccgggcgatcgacgacgcgcgcaagccggcctccggcgtgccggtc
ctgctcggcatcaccaaggcgagcctgcagacccgttcgttcatctcggctgcttcgttc
caggagaccacccgcgtccttaccgaggcggcggtcaacggcaagcaggacgagctggag
ggtctgaaggagaacgtcatcgtcggccgtctgatcccggccggcaccggcggcatgatg
acccgcatccgcgagatcgcgcagcatcgcgacgatctgatcctggaggcgcgcaaggcg
tcttccacgatcgaccaggcggatggcatgctggaagacctgaccggcgcgggcgaataa
DBGET
integrated database retrieval system
