Spiroplasma ixodetis: SHM_00380
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Entry
SHM_00380 CDS
T08792
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
sixo
Spiroplasma ixodetis
Brite
KEGG Orthology (KO) [BR:
sixo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sixo03032
]
SHM_00380 (gyrB)
03400 DNA repair and recombination proteins [BR:
sixo03400
]
SHM_00380 (gyrB)
Enzymes [BR:
sixo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
SHM_00380 (gyrB)
DNA replication proteins [BR:
sixo03032
]
Prokaryotic type
DNA Topoisomerases
SHM_00380 (gyrB)
DNA repair and recombination proteins [BR:
sixo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SHM_00380 (gyrB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
HATPase_c
Toprim
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
BDT02392
UniProt:
A0ABM8BRC9
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Position
28648..30567
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AA seq
639 aa
AA seq
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MSTRTPNDYNANSIQVLEGLEAVRKRPGMYIGSTAERGLHHLVWEIVDNAVDEVIAGFCT
KISVIITKNNEILVKDNGRGIPTDIHPKTNISTVETVFTTLHAGGKFDNGSYKVSGGLHG
VGASVVNALSKYLEVTIYRDGNYFFQKYIEGGKPELPLAIIGQSDKKGTTVLFKPDESIF
TETVNFSFIIIKTRLRQLAFLNKGLTIQVIDERENKEETFCYEGGIKEYVAFLNNKFEPL
KHEIIYGEFEINGINTEIAFQYNESEESQIFSFCNNINTPEGGTHEDGFRLALTRELNSY
AKKNNLLKNNDETFTGDDVKEGILAIISIQHPNPQYEGQTKTKLGNSEVRKIVSNVTGKI
INKFLLENPAEAKIIINKVILSVSARLASKKARENIMTSRKNPLQFSNLPGKLADCSSKD
PTKTEVFLVEGESAGGTAKLGRSREIQAILPLRGKIINVEKARLLKVFSDEEINNLIISF
GCGVGKEFNITKLRYHKIIIMTDADVDGSHIKTLLLTFFYRYMRPLIDAGYIYIAQPPLY
KFYSGKFVKYAYNDQELQEIKDNFNGTNFNIQRYKGLGEMNATQLWETTMDPQHRILLQV
SIDDASEADETFSILMGKDVFPRKEFIQENAKYVKNIDA
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacaaggactccaaatgattataatgctaactcaattcaagttttagaaggacta
gaagcagttagaaaacgacctggaatgtatattggttccactgcagaaagaggattacat
cacttagtttgagaaatagttgataatgctgttgatgaagttattgctggtttttgtaca
aaaatttctgtaattattactaaaaataatgaaatattagtaaaagataatggtcgaggt
attcctactgatatacatccaaagactaatatttcaacagtagaaacggtttttactaca
ttacatgctggtggaaaatttgataatggttcttataaagtatcaggtggtttacatggt
gttggtgcttcagtagtaaatgctttaagtaagtatttggaagttactatttaccgtgat
ggtaattatttttttcaaaaatatattgaaggtggtaaaccagaattaccattggcaatt
attggacaaagtgataaaaaaggaacaactgttttatttaaacctgatgaaagtattttt
actgaaactgtaaattttagttttataataattaaaacaaggttaagacaacttgctttt
ttaaataaaggtttaactattcaagttattgatgaacgtgaaaataaagaagaaactttt
tgttatgaagggggcattaaagaatatgttgcctttttaaataataaatttgaaccttta
aaacatgaaattatttatggagagtttgaaataaatggtataaacacagaaatagctttt
caatataatgaaagtgaagaatctcaaatattttcattttgtaataatattaatacacct
gaaggtggaacacatgaagatggttttcgtttagcattaacaagagaattgaattcttat
gcgaaaaaaaataatcttttaaaaaataatgatgaaacatttactggtgatgatgttaaa
gaaggaattttagcaattatttcaattcaacatcctaatccacaatatgaagggcaaact
aaaacaaagcttggtaattctgaagttagaaaaattgtttctaatgtaactggaaaaata
attaataaatttttattggaaaatcctgctgaagcaaaaattattattaacaaagttatt
ttatcagtaagtgcacgtttagcatctaaaaaggcacgtgagaatattatgacttcgaga
aaaaatcctttacaattttctaatttacctggtaaattagcagattgttcttctaaagat
ccaactaaaacagaagtttttcttgtcgaaggtgagtcagctggtggaactgcaaagttg
ggaagaagtagagaaattcaagcaattttaccattaaggggaaaaataattaatgttgaa
aaagcacgacttttaaaagttttttctgacgaagaaataaataatcttattatttccttt
ggctgtggtgttggtaaagaatttaatattactaaattacgttatcataaaattattatt
atgactgatgctgatgttgatggttcacatattaaaacattattattaacatttttttat
cgttacatgcgtcccttaattgatgctggttatatatatatagctcagcctcctttatac
aaattttatagtggtaaatttgttaaatatgcatataatgatcaagaattgcaagaaatt
aaagataattttaatggaactaattttaacattcaacgttataaaggtttaggagaaatg
aatgccacacaactatgagaaacaactatggatccacaacatagaattttattacaagta
agtattgatgatgcttcagaagcagatgaaactttttcaatattgatggggaaagatgta
tttccacgaaaagaatttattcaagaaaatgctaaatatgtaaaaaacattgatgcttaa
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