Spiroplasma ixodetis: SHM_24400
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Entry
SHM_24400 CDS
T08792
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sixo
Spiroplasma ixodetis
Pathway
sixo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sixo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SHM_24400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sixo03019
]
SHM_24400
03009 Ribosome biogenesis [BR:
sixo03009
]
SHM_24400
Enzymes [BR:
sixo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SHM_24400
Messenger RNA biogenesis [BR:
sixo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SHM_24400
Ribosome biogenesis [BR:
sixo03009
]
Prokaryotic type
rRNA helicases
SHM_24400
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Utp25_C
P-loop_SecA
Helicase_C_2
Cas3-like_C_2
AAA_22
HP0268
Motif
Other DBs
NCBI-ProteinID:
BDT04794
UniProt:
A0ABN6T5I0
LinkDB
All DBs
Position
complement(1779352..1780593)
Genome browser
AA seq
413 aa
AA seq
DB search
MSFTELNLKQELTAAIAKWGYTTPTPIQKKTIPVSLQKKDIIGKSHTGTGKTAAFVLPIL
HNLDIKLYRNQAIIVCPTRELAIQVAKQVKKYAYFLNGVNVALLCGGVNIRNQLYDLRTS
NIVVGTPGRITDHINRGSLRLNSIKTLVLDEADEMLKMGFKKDIDFLFENSPQNIQTVLF
SATMSKPVLKIADDYQNNPVSISVEDESQKLQQANIKQYYFDCRNIIKETALVALYQKLQ
PQLSIVFSNTKDFTNKIAQLLEQNNIKCAVINGDKSQRERMEAMRQFKNGKVKVLIATDV
VARGIDINGIDYVFNYDIPREYEYYTHRIGRTARAGAQGTAITLVSNRVQYNEIQEIQYY
QNHEITLLDTTGWDLPKNVVKVPTKLNFSSHNNRNDFKRNVDNNSKWKRKPKY
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgagttttacagaactaaatttaaaacaagaattaactgctgctattgctaaatggggt
tatactaccccaacaccaattcaaaagaagacaattccagtttctttacaaaaaaaagat
attattggaaaaagtcataccggaaccggaaaaactgctgcctttgtcttacctatatta
cataatttagatataaaattatatcgtaatcaagccattattgtttgtccaactagagaa
ttggcaatccaagttgctaaacaagtaaaaaaatatgcttattttttaaatggcgttaat
gttgctttattatgcggtggtgttaatattagaaatcaattatatgatttaagaactagt
aacatagttgttggaacaccaggaagaattactgatcatattaatcgtggcagtttaaga
ttaaattcaattaaaacattagttttagatgaagcagatgaaatgttaaaaatgggattt
aaaaaagatattgatttcttatttgaaaattcacctcaaaatattcaaactgttcttttt
tcagcgacaatgtcaaaaccagttttaaaaattgctgatgattatcaaaataatccagtt
agtattagtgttgaagatgaaagtcaaaaattacaacaagcaaatattaaacaatattat
tttgattgtcgtaatataataaaagaaactgcattagttgctttatatcaaaaattacaa
ccacaattaagtattgttttttcaaatacaaaagattttactaacaaaatcgcacaatta
ttagaacaaaataatattaaatgtgctgttattaacggtgataaaagtcaaagagaacgt
atggaagcaatgagacaatttaaaaatggtaaggttaaagtactaattgctactgatgtt
gttgctagaggaattgacattaatggtattgattatgtttttaattatgatattccacgc
gaatatgagtactatactcatcgtattggtagaacagctcgtgctggagcacaaggcact
gctattactttagtaagtaatagagttcaatataatgaaattcaagaaattcaatattat
caaaatcacgaaattactttactagatactacaggttgagatttacctaaaaatgttgtt
aaagtaccgactaaattaaatttttcatctcataacaatagaaatgattttaaacgtaat
gttgataataattcaaaatgaaaaagaaaaccaaaatattaa
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