Spiroplasma ixodetis: SHM_25590
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Entry
SHM_25590 CDS
T08792
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sixo
Spiroplasma ixodetis
Pathway
sixo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sixo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SHM_25590 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sixo03021
]
SHM_25590 (rpoA)
03400 DNA repair and recombination proteins [BR:
sixo03400
]
SHM_25590 (rpoA)
Enzymes [BR:
sixo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SHM_25590 (rpoA)
Transcription machinery [BR:
sixo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SHM_25590 (rpoA)
DNA repair and recombination proteins [BR:
sixo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SHM_25590 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
Motif
Other DBs
NCBI-ProteinID:
BDT04913
LinkDB
All DBs
Position
1875543..1876511
Genome browser
AA seq
322 aa
AA seq
DB search
MEQQFLKPKFSLNSENSAINYSEFIVSQLERGYGTTLANALRRTLLSSVPGISVYAIRIS
GVSHEFTAVKGVIENVSEIILNVKDLVLAFDGDIQKDEKIANLKISITGEQDITAGDISC
PTDVRVVNPELIIARTTSRNVLFEMELMVKKSRGYSSFEENKKEIANSSGIIAIDSNFSP
VEKVDYKIEPVTKTLKGIEYEKLILGVQTNGSVKAASAIAMAAKILMSHIEFFVNLDDNV
KNFEVISITNEQENNDLNKALEELNLTVRSYNCLKRDGYKTLGDIVSKSLDEIKQIKHLG
SKSIKEIEDCVSKHNLEFSIKN
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atggaacaacaatttttaaaaccaaaatttagtttaaacagtgaaaatagtgctattaat
tacagtgaatttattgtgagtcaattagaacgtggttatggaacaactttagctaatgcc
ttaagaagaacattattatcttcagtaccaggtatttctgtatatgcaattagaataagt
ggtgtatctcatgaatttactgcagttaaaggtgtaattgaaaatgtttctgaaataatt
ttaaatgttaaggacttagttttagcctttgatggtgatattcaaaaggacgaaaaaatt
gctaatttaaaaattagtattactggtgaacaagatattactgctggagatattagttgt
ccaactgatgttagagtagttaatccagaattaattattgctcgaacaacttcaagaaat
gttctttttgaaatggaattaatggtaaagaaatctcgtggttattcttcatttgaggaa
aataaaaaagaaattgctaatagttcaggcattattgctattgattcaaacttttcaccc
gttgaaaaagttgattataaaattgaacctgtaactaaaacattaaaaggtattgaatat
gaaaaattaattcttggtgtacaaactaatggttcagttaaagcagcatcagctattgca
atggcagctaaaattttaatgagtcatattgaattttttgttaatttagatgataatgtt
aaaaactttgaagttatttcaattactaatgagcaagaaaataatgatttaaacaaagcc
ttagaagaattgaatttaactgttcgttcatacaattgtttaaaacgtgatggttataaa
actttgggtgatattgtaagtaaaagtttagatgaaattaaacaaattaaacatttaggt
tcaaaatcaattaaagaaattgaagattgtgtatcaaaacataatttagagttttctatt
aaaaactaa
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