Saccharolobus islandicus Y.G.57.14: YG5714_1242
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Entry
YG5714_1242 CDS
T00901
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
siy
Saccharolobus islandicus Y.G.57.14
Brite
KEGG Orthology (KO) [BR:
siy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
siy03016
]
YG5714_1242
Enzymes [BR:
siy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
YG5714_1242
Transfer RNA biogenesis [BR:
siy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
YG5714_1242
Prokaryotic type
tRNA splicing ligases
YG5714_1242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACP45508
UniProt:
C3NDW9
LinkDB
All DBs
Position
complement(1164857..1166305)
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AA seq
482 aa
AA seq
DB search
MQINITRVNSYEWRIDKGTQECIKVPVTIFADDVLIEKMKQDMTLRQATNVACLPGVQES
IYVLPDGHQGYGFPIGGIAATAIDEGGVVSPGGIGYDINCGVRLLRTNLDYKDVKPKLAQ
LVEELHRNVPSGVGSEGKVKLTSQQLDQVLAEGVAWAVDKGFGWKEDMNHMEQHGSWELA
DPSKVSPIAKQRGASQLGTLGAGNHFLEIQVVDKIFDPQIAKAIGVDHEGQVMVMVHTGS
RGLGHQVASDYLQIMERAMKKYNIQLPDRELAAVPFESREGQDYFHAMASGANFAWTNRQ
LITHWTRESFGRVFGVDPEKLDLNIVYDVAHNIAKIEEYVIEGKRKKVLVHRKGATRAFP
PGSPEIPADHRNIGQIVLIPGSMGTASYVMAGIPEGRRTWFTAPHGAGRWMSREAAVRNY
PANVVVETLAEKGIVVRAATRRVVAEEAPGAYKDVDRVAKVAHEVKIAKLVMRLRPIGVT
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcagattaacattactagagttaattcatatgaatggcgtatcgataaaggtacccaa
gaatgtataaaagttcccgttaccatatttgcagatgacgttttgattgagaaaatgaaa
caagatatgacattaagacaagctactaacgtggcttgtttacctggtgttcaagaatca
atttacgttttaccagatggccatcaaggttacggttttcctataggcggcatagcagct
actgcaattgatgaaggaggagttgtaagccctggagggataggatatgatataaattgt
ggtgttagattactcagaaccaatttagattataaagacgtaaagccaaaattagcccag
ttagttgaggagctacatagaaacgtacctagtggtgtaggaagcgagggtaaagtgaaa
cttacctctcaacaattggatcaagtattagcagaaggagtagcgtgggcagtcgataag
ggctttggatggaaagaagatatgaatcatatggaacaacatggtagttgggagttggca
gacccttcgaaagtaagtccaatagctaaacaaagaggtgcttctcaattaggaacttta
ggagctggtaatcacttcttagaaattcaagttgttgataagatatttgatcctcaaatt
gctaaagcaataggagtggatcacgaaggtcaagtaatggttatggttcatacggggtca
agaggcctaggccatcaagtagctagtgattatttgcaaattatggaaagagccatgaag
aagtataacattcaattgccagatagggaactagccgcagttccctttgagagtagagag
ggtcaagattactttcacgcaatggcatctggagctaatttcgcgtggacgaatagacaa
ttaattacccattggacaagagagagctttggaagagtgttcggtgttgacccagagaaa
ttagatcttaatatagtttatgatgtagcgcataatatagccaaaattgaggagtatgta
attgagggaaaaaggaagaaagtattggtacataggaaaggtgctactagagccttccca
cctggcagtccagaaatccctgctgatcatagaaatattggtcagatcgtcttaatacca
ggtagtatgggtactgctagctacgttatggctggaataccagaaggtagaaggacatgg
tttactgcgcctcatggtgctggtaggtggatgtctagagaagctgcggtgagaaattac
cccgctaatgtagtagttgaaactttagctgaaaaaggtatagtggtaagggctgctacc
aggagggtagtagctgaagaggcacctggagcttataaagatgttgatagagtagctaaa
gtcgctcatgaagttaaaatcgctaaattggttatgcgattaagacctataggggttacc
aaaggatga
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