Saccharolobus islandicus Y.G.57.14: YG5714_1400
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Entry
YG5714_1400 CDS
T00901
Name
(GenBank) KH type 1 domain protein
KO
K03679
exosome complex component RRP4
Organism
siy
Saccharolobus islandicus Y.G.57.14
Pathway
siy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
siy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YG5714_1400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
siy03019
]
YG5714_1400
Messenger RNA biogenesis [BR:
siy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
YG5714_1400
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
YG5714_1400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
RRP4_S1
KH_6
RRP40_S1
S1
KH_1
PIMT_C
Motif
Other DBs
NCBI-ProteinID:
ACP45667
UniProt:
C3NEC8
LinkDB
All DBs
Position
1301124..1301867
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AA seq
247 aa
AA seq
DB search
MSQSQKIVLQPRSIVVPGELLAEGEFQIPWSPYILKVNSKYYSTVVGLFDVKDTQFEVIP
LEGSFYYPKVNDVVIGLVEDVEIYGWVVDIKSPYKAYLPASNLLGRSVNVGEDLRRYLDV
GDYVIARIENFDRSIDPVLSVKGKDLGRVNNGIVIDIMPVKVPRVIGKNKSMYETLTSKS
GCSMFVANNGRIWATCPSRFSEEILIEAIRKIENESHIKGLTDRIKQFIEEKLGERNASS
GETKTNP
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagtcccagaaaattgttttacagccaagatcaatagtagtgcctggcgagtta
ttagctgaaggcgagttccagattccttggtctccttatatattaaaggttaatagtaaa
tattactccacagttgttggactttttgatgtaaaagatactcagtttgaagtgattccg
ttggaaggttcgttttactatcctaaggtcaatgatgtggtaataggtttagtggaggac
gttgaaatctatggttgggtggttgacataaaatcgccttataaggcatatttaccagcc
tcaaatcttttaggaagatccgttaatgttggagaggatttaaggaggtatttagatgta
ggtgactatgttatagctagaattgaaaattttgatagatcaatagatcccgttttatca
gttaagggcaaggatctaggtcgtgtgaataatggtatagtcattgatataatgccagtt
aaagttccgcgtgttataggtaagaataaaagtatgtatgagactttgacctcaaaaagt
ggatgcagtatgtttgttgccaataatggtagaatatgggctacttgtccttcccgcttt
tctgaagaaattttaatcgaggccattaggaagattgaaaatgagtcacatataaaagga
ttgacagatagaataaaacaattcattgaggaaaaattaggtgagagaaatgcttcaagt
ggagagaccaaaactaatccttga
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