Saccharolobus islandicus Y.G.57.14: YG5714_1402
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Entry
YG5714_1402 CDS
T00901
Name
(GenBank) 3' exoribonuclease
KO
K12589
exosome complex component RRP42
Organism
siy
Saccharolobus islandicus Y.G.57.14
Pathway
siy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
siy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YG5714_1402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
siy03019
]
YG5714_1402
Messenger RNA biogenesis [BR:
siy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
YG5714_1402
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
YG5714_1402
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
TagH_SH3-like
Motif
Other DBs
NCBI-ProteinID:
ACP45669
UniProt:
C3NED0
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All DBs
Position
1302573..1303400
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AA seq
275 aa
AA seq
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MSSTPSNQNIIPLIKKESIVSLFEKGTRQDGRKLTDYRPLSITLDYAKKADGSALVKLGT
TMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRD
SKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGF
RVNKNEVVGKLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQK
SGKGSMSLQDIDQAENTARLVAVKLLEELKKQLGI
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttcaactccatcgaatcaaaatattatacctttaattaagaaggaaagtatagta
agtctttttgagaaaggcactaggcaagacggaagaaaattaacggattatagacctctt
tctataaccttggattatgcaaaaaaggctgatggttctgcgttagttaagttaggcacg
acaatggtattagctgggacaaaacttgaaatagataaaccttacgaagatacgcctaac
caaggaaacctcattgtgaatgttgaactcctacctttagcctatgagacctttgaacct
gggcctccagatgagaatgctattgaattagctagagtagtagatagaagtttaagggat
tctaaagctctagatctaactaaacttgtaatagaacccggtaaaagtgtatggacagta
tggcttgacgtttacgtattagactatggtgggaatgtattggatgcatgtacgttggcc
tcagttgcagcattgtataatactaaagtgtataaggtagaacaagattctaatgggttt
agagtcaataaaaatgaagttgtgggtaaattaccattgaatcatccagtagttacagtg
tctatagcaaaagttgacaaatatttaatagttgatccagatttggatgaagagtcaata
atggatactaaggtttccttttcctatacgccagatctaaaaatagtggggattcaaaag
agtggaaagggcagtatgtcattacaagatattgatcaggctgagaatacagcaagatta
gtagctgtcaagcttttagaagaacttaaaaagcagttaggaatttaa
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