Streptococcus iniae YSFST01-82: SI82_03175
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Entry
SI82_03175 CDS
T03674
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
siz
Streptococcus iniae YSFST01-82
Pathway
siz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
siz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SI82_03175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
siz03019
]
SI82_03175
03009 Ribosome biogenesis [BR:
siz03009
]
SI82_03175
Enzymes [BR:
siz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SI82_03175
Messenger RNA biogenesis [BR:
siz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SI82_03175
Ribosome biogenesis [BR:
siz03009
]
Prokaryotic type
rRNA helicases
SI82_03175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AJG25611
LinkDB
All DBs
Position
621905..623536
Genome browser
AA seq
543 aa
AA seq
DB search
MKFTELNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
NKIRTDDNIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIDKQIKALKSGA
HIVVGTPGRLLDLIKRKALKLEHVETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLF
SATMPAPIKQIGVKFMKNPEHVQIKNKELTNVNVEQFYVRVKEQEKFDTMTRLMDVQQPE
LAIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQIDILVATDVAA
RGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKTGESITFVSPNEMGYLSMIETLTKK
QMLPLKPATAEEAFQAKKKIALKKIERDFADETIRSNFDKFKGDAIQLASEFTPEELALY
ILSLTVQDPDTLPEVEIAREKPLPFKYVGGGHGGGKKGKGGRGRDNRGRGGRDGDRRGGY
RGDRNRDDRDNDRRRNKRDKRDNHDASASGSRKPKRNAKEFYNKDKKSGNKKDSGFVIRH
KGE
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagaattaaacttatcagaagacatccaatcagctgttgtaacagcaggt
tttgaaaaagcatctcctattcaggaaatgactattccattagctttggaaggtaaggat
gttattggtcaggctcaaacaggaactggtaaaacagctgcatttggtcttccaaccttg
aataagattcgcacggatgacaatatcatccaagcattagtgattgcaccaacgcgtgaa
ttagcggtacaaagtcaagaagaacttttccgttttggtcgtgataaaggtgttaaagtt
cgctctgtatatggcggatcaagtattgataaacaaattaaagcattgaaatccggtgct
catattgttgttggtacaccaggtcgtttactagaccttatcaaacgtaaagcattgaaa
ctagaacatgttgaaacattgattcttgatgaagctgatgaaatgttaaacatgggcttc
cttgaagatattgaagctattatcagtcgtgttcctgaagaacgtcaaacgctcctattt
tcagcaacaatgcctgctccaattaaacaaattggtgttaagttcatgaaaaatcctgaa
catgttcaaattaaaaacaaagaattaacaaatgttaatgttgaacaattctacgttcgt
gttaaagaacaagaaaaatttgacaccatgacacgtcttatggacgttcaacaaccagaa
cttgctattgtttttggtcgtacaaaacgtcgtgttgatgaaattacccgtggtcttaaa
ttacgtggtttccgtgcagaaggtattcatggagaccttgatcaaaacaaacgtttacgt
gttattcgtgattttaaaggggaccaaattgatattttagttgcaactgacgttgctgcg
cgtggacttgatatttcaggagttactcacgtttataactacgacatcactcaagatcca
gaaagttatgttcaccgtattggtcgtacgggtcgtgctggtaaaacaggtgagtctatt
acttttgtatcaccaaacgaaatgggttacttgtcaatgattgaaacattgactaaaaaa
caaatgcttccactgaaacctgcaacagcagaagaagcattccaagcgaaaaagaaaatt
gctcttaagaaaattgaacgtgactttgctgatgagactattcgttcaaactttgacaaa
ttcaaaggagatgcaattcaattagcttcagaatttacacctgaagaattagcgctttat
atcttgagtttaaccgttcaagatccagacaccctaccagaagttgaaattgcacgtgaa
aaaccattaccatttaaatatgttggtggtggtcatggcggtggcaaaaaaggtaaaggc
ggccgtggtagagataaccgtggacgtggtggccgtgatggtgaccgtcgtggtggttac
cgtggtgatcgtaaccgtgatgaccgtgataatgaccgtcgtcgcaacaaacgtgataaa
cgtgacaaccatgatgcaagtgctagtggtagccgcaaaccaaaacgtaatgcaaaagaa
ttttacaataaagacaaaaagtctggtaataaaaaggattcaggtttcgttattcgtcat
aaaggtgaataa
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