Streptococcus iniae YSFST01-82: SI82_07980
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Entry
SI82_07980 CDS
T03674
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
siz
Streptococcus iniae YSFST01-82
Brite
KEGG Orthology (KO) [BR:
siz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
siz03019
]
SI82_07980
03009 Ribosome biogenesis [BR:
siz03009
]
SI82_07980
Enzymes [BR:
siz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SI82_07980
Messenger RNA biogenesis [BR:
siz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SI82_07980
Ribosome biogenesis [BR:
siz03009
]
Prokaryotic type
rRNA helicases
SI82_07980
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AJG26509
UniProt:
A0A3L8GFN2
LinkDB
All DBs
Position
complement(1607440..1608783)
Genome browser
AA seq
447 aa
AA seq
DB search
MSFKDYNFKEYIQKALDAIHFTEPTEVQKRLIPVVKSGRDLVGESKTGSGKTHTFLLPIF
EQLNEDSQSVQVVITAPSRELASQIFAAAKQLASYSNKEIRLANYVGGTDKLRQIEKLKV
SQPHIVVGTPGRIYDLVKSGDLGIHKARTFVVDEADMTLDMGFLDTVDKIASSLPKEVQI
LVFSATIPKKLQPFLKKYLTNPLIEQIKTETVIADTIDNWLVSTKGRDKNGQIFNILKTM
QPYLAMIFVNTKERADELHAFLVANGLRVAKIHGGVPPRERKRIMNQVKKLDFEYIVATD
LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLTGTAITLYQPSDDSDIKELEKM
GIAFVPKVLKDGEFQDTYDRDRRNSREKSYQKLDTEMIGLVKKKKKKVKPAYKKKIQWVV
DEKRRKERRSENKARGRAERKARKQSF
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaaagattataattttaaggaatacatccaaaaggccttggatgctattcat
tttacagagccaacagaagttcaaaaacgccttattcctgttgtcaaatcagggcgtgac
ttggttggggaatcaaaaacaggttcagggaaaacacacacctttttactgcctattttt
gaacaactcaatgaggatagtcaatctgtccaagtggtcattacggcgccaagtcgtgag
cttgcaagtcaaatttttgcagccgccaaacaacttgctagctattctaataaggaaatc
agattagccaactatgttggaggtacagataaattacgtcaaattgaaaaattaaaggtt
tcacaaccacatattgttgttggaacacctgggcgtatttatgatttggttaaatcaggg
gatttaggaattcataaagcaagaacttttgttgtggatgaagctgatatgacacttgat
atgggctttttggatactgttgataagattgcttcatcacttccaaaagaagtgcaaatt
cttgtcttttcagcaaccattcctaagaaattacagccattcttgaaaaaatatttgacc
aatcctttgattgaacaaattaagacagaaactgtcattgctgacaccattgacaactgg
ttagtgtcaacaaaaggccgtgataaaaatggtcagatttttaacatcttgaaaaccatg
cagccttatttagcaatgatttttgttaacactaaagaaagagctgatgagttgcatgct
ttcctagtggcaaatggtttgcgtgttgcaaaaatacatggcggtgttcctccacgtgaa
cgcaaacgcatcatgaatcaggtgaagaaacttgattttgaatacattgtagcaactgat
ttggctgcgcgtggtattgatattgaaggggttagtcatgtaatcaatgatgctattcct
caggatctttcattctttgtgcaccgtgttggtcgtactgggcgtaatggtctcacaggc
acagctattactctttatcagccaagtgatgattctgatatcaaggaacttgagaaaatg
ggcatcgcctttgttcctaaagtcctaaaagatggtgagtttcaggatacttatgatcgt
gatcgccgtaatagtcgtgaaaaatcatatcagaaattagacactgaaatgattggtctg
gttaaaaagaaaaagaaaaaggttaaaccagcttataagaagaaaattcagtgggttgtt
gatgaaaaacgtcgtaaagaacgtcgttcagaaaacaaagcgcgtggaagagcagaacgt
aaagctagaaaacaaagtttttaa
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