KEGG   Streptococcus iniae SFST01-82: SI82_08610
Entry
SI82_08610        CDS       T03674                                 
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
siz  Streptococcus iniae SFST01-82
Pathway
siz03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:siz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    SI82_08610
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:siz03400]
    SI82_08610
DNA repair and recombination proteins [BR:siz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SI82_08610
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      SI82_08610
SSDB
Motif
Pfam: UvrA_DNA-bind UvrA_inter ABC_tran SMC_N AAA_16 RsgA_GTPase AAA_29 nSTAND1 AAA_22 AAA_21 AAA_33 AAA_23 nSTAND3 Viral_helicase1 AAA_18 BCA_ABC_TP_C NACHT AAA_14 MMR_HSR1 ATPase SLFN-g3_helicase cobW T2SSE Septin YobI-ATPase NB-ARC DUF87 DUF4350 AAA_24 PRK DnaJ_CXXCXGXG IIGP DUF463 MeaB NTPase_1 Dynamin_N DO-GTPase2
Other DBs
NCBI-ProteinID: AJG26631
UniProt: A0A3L8GF90
LinkDB
Position
complement(1743192..1746014)
AA seq 940 aa
MQDKLIIRGARAHNLKNIDVEIPRDKLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSA
YARQFLGNMEKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLYARVGTPY
CINGHGAITASSVEQIVEQVLDLPERSRMQILAPIVRRKKGQQKTIFEKIQKDGYVRVRV
DGEIYDVSEVPELSKSKMHDIEVVIDRLVNKDGIRSRLFDSIEAALRLGDGYLIIDTMDG
NELLFSEHYSCPVCGFTVPELEPRLFSFNAPFGSCSTCDGLGIKLEVDMDLVIPDPSKSL
REGALAPWNPISSNYYPSMLEQAMEAFGVDMDKPYEDLSEDEKQLVLYGSGDREFHFHYV
NDFGGERNIDIVFEGVVTNINRRYHETNSDYTRNVMRTYMNELTCNTCHGYRLNDQALCV
HVGGEQAPHIGQLSELSISDHLNHLENLTLSPNEATIAKPILKEIHDRLTFLNNVGLNYL
TLSRSSGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIESLKKMRDLG
NTLIVVEHDEDTMMQADWLIDVGPGAGAFGGQIIASGTPKQVAKNKKSITGQYLSGKKSI
PLPLERRVGNGRFIEIQGARENNLQNLDVRFPLGKFIAVTGVSGSGKSTLINSILKKAVA
QKLNRNSEKPGKHKTVTGIEHIERLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGHRYNSETLEVHY
KEKNIAQILDMTVDDAVEFFAAIPKIARKIQTIKDVGLGYVTLGQPATTLSGGEAQRMKL
ASELHKRSTGKSLYILDEPTTGLHTDDIARLLTVLERFVDDGNTVLVIEHNLDVIKSADH
IIDLGPEGGIGGGQIIATGTPEEIAAVPESYTGQYLKEKL
NT seq 2823 nt   +upstreamnt  +downstreamnt
atgcaagataaacttattattcgtggagcgcgtgctcacaatttaaaaaatattgatgtt
gagattcctcgcgacaagttagttgttgtgacagggttgtcaggatcaggaaaatcaagt
ctggccttcgatacgatttatgccgaagggcaacggcgctatgtagagagtctttctgct
tatgcaaggcaatttttagggaacatggaaaaacctgatgtggattctattgatggcctt
agcccagcaatttctatagaccaaaaaacaaccagtaaaaatccacgttcgaccgttggg
acagttacagaaatcaacgactatttgaggttgctttatgctcgtgttgggacgccttac
tgtattaatggtcatggggctattacggcctcatcggttgagcagattgtggagcaggtt
ttggatttgccagaacgtagtcgcatgcaaattttagctcctattgttcgccgaaaaaaa
gggcaacaaaaaaccatttttgaaaaaattcaaaaagatggttatgttcgtgttcgcgtt
gacggtgagatttatgatgtgtcagaagtcccagaattatcaaaaagcaagatgcatgat
attgaagtggtaattgaccgtttggtcaataaagatggcatcagaagtcgtctttttgac
tccattgaagctgctttaaggttaggtgatggttatttaatcattgacactatggatggc
aatgagttgctcttttcggaacattattcttgtccggtttgtggctttactgtgccggaa
ttagaaccccgtcttttttcatttaatgctccttttgggtcttgctcaacttgtgatggt
ttagggattaagttggaagttgatatggacttggttattccagatccaagtaaaagtttg
agagaaggggcgttggcaccttggaatcctatttcatctaattattacccatccatgtta
gaacaggccatggaggcctttggtgtggatatggataaaccttatgaagatttgtcagaa
gatgagaagcagttggtcttgtatggttctggtgatcgagaattccattttcattatgtc
aatgattttggcggcgaacgcaatattgatattgtctttgaaggtgttgttacaaatatc
aatcgtcgctaccatgaaactaatagtgattacacacgaaatgttatgcgcacctacatg
aatgagctaacatgtaacacttgtcatggctatcgccttaatgaccaagctttatgtgtt
catgtaggaggtgaacaggcgcctcatattggtcaattatcagagttatcaatttctgat
catttaaaccatttggaaaacttaacattgagtccaaatgaagcaaccattgctaaaccc
attcttaaagaaattcatgatcgcttgacattcttgaataatgttggactcaactatttg
accctctctcgttcttcggggactctttctggtggtgagagccaacggattcgactagca
acgcaaattggctctaatttatcgggtgtactctacattcttgatgaaccttcaattggt
ttgcaccaaagggataatgacaggctcattgaaagccttaaaaagatgcgagatttgggc
aataccttgattgttgttgaacatgatgaagatactatgatgcaggcggattggctgatt
gatgttggtccgggcgcaggcgcatttggtggccagatcattgcatcggggactcctaaa
caagtggctaaaaataaaaagtccattacaggacagtatttgtctggcaaaaaatcaatc
cccttaccgctggaacgtcgcgtgggaaatggtcgttttattgaaatacagggtgcccgt
gaaaacaacttacagaatctagatgttcgtttcccactgggaaaattcattgccgttacc
ggtgtatctggttcagggaaatccaccttgattaatagcattttgaaaaaagcagtagct
caaaagctaaatcgtaattctgaaaagccaggtaaacacaagacagtaaccggtattgag
catattgaacgtcttattgacattgatcaaagcccgataggacgcacaccaaggtcaaac
ccagcaacctatacgggtgtttttgatgatattagggacctgtttgctcagaccaatgaa
gccaaaattcgtggttataaaaaagggcgcttctcctttaatgtcaaaggggggcgttgt
gaagcttgctctggtgatggtattatcaaaattgagatgcactttttaccagacgtttat
gttccatgtgaagtctgtcatggtcacaggtataattctgagacacttgaagttcactat
aaggaaaaaaacattgctcaaattttagacatgacagttgatgatgcagttgagttcttt
gcggcaattcctaagattgcacgtaagattcaaaccattaaagatgttggtctaggttat
gtcacccttggacaacctgcaacgactttatctggtggagaagcacaacggatgaagtta
gccagtgaactgcataaacgttcaactggtaagagcctttatattcttgatgaaccaact
actggcttacatacagatgacattgcgcggctgcttactgtcttagagcgttttgttgat
gatggcaacactgttttagttattgaacataacttagatgtgattaaatcagctgaccac
atcattgatttaggaccagaagggggaatcggcggcggacaaatcattgccaccggcaca
ccagaagaaatcgcagcggtcccagaaagttataccggacaatacctaaaagaaaaatta
taa

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