Shewanella japonica: SJ2017_0049
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Entry
SJ2017_0049 CDS
T04959
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sja
Shewanella japonica
Pathway
sja03030
DNA replication
sja03410
Base excision repair
sja03420
Nucleotide excision repair
sja03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SJ2017_0049
03410 Base excision repair
SJ2017_0049
03420 Nucleotide excision repair
SJ2017_0049
03440 Homologous recombination
SJ2017_0049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sja03032
]
SJ2017_0049
03400 DNA repair and recombination proteins [BR:
sja03400
]
SJ2017_0049
Enzymes [BR:
sja01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SJ2017_0049
DNA replication proteins [BR:
sja03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SJ2017_0049
DNA repair and recombination proteins [BR:
sja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SJ2017_0049
NER (nucleotide excision repair)
GGR (global genome repair) factors
SJ2017_0049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
ARD20398
UniProt:
A0ABN4Y8K9
LinkDB
All DBs
Position
complement(60313..63072)
Genome browser
AA seq
919 aa
AA seq
DB search
MPTIPNNPLVLVDGSSYLYRAFYAPPHLTNSKGEATGAVYGVVNMLRSLMSRYNPSHIAV
VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIAPLHAIIHALGLPLICIPGVEADDVIGT
IALKASKEGRATLISTGDKDMAQLVDDNVTLINTMTDTIMGPAEVTEKFGVGPELIIDLL
AMMGDKADNIPGLPGVGEKTALAMLTGVGGVDKLIANPQSVLDVTFRGSKTMPKKIEDNK
EMLQLSYDLATIKTDVEWDDDWAPLEIQPQNRDELIKLFGEMEFKRWLAEVLDNKSAFST
ATATTTNEVQEATPAIDVEYETILTETDLANWISKLSKAELIAVDTETTSLNYMEAKLVG
ISFAIEAGKAAYLPLAHDYLDAPEQLPMEYALEQLRPILESDSIKKVGQNLKYDISIFAN
AGITLKGVQFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEEIAGKGAKQLTFNQIE
LDVASPYAAEDADITLRLHQHLWPRVEKEAKLTSVFNDLELPLIQVLSDIERQGVLIDSM
LLSQQSDELAQKIDELETKAYDIAGEKFNLSSPKQLQALFFEKLGYPIIKKTPKGAPSTA
EDVLIELALDYPLPKLILQHRSLSKLKSTYTDKLPLMVNTETGRVHTSYHQANAATGRLS
SSEPNLQNIPIRTEEGRRIRQAFIAPEGRKVLAADYSQIELRIMAHLSQDKGLLTAFAEN
KDIHKATAAEVFGVHFEEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIPRKEAQTYIDT
YFARYPGVLKYMEDTRALAAEVGYVETLYGRRLYLPDIKDRNAMRRQAAERAAINAPMQG
TAADIIKKAMITIDQWIKSETNGEITMIMQVHDELVFEIDESKADALQAKVCELMAQAAS
LDVTLLAEAGIGDNWHEAH
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgccaacaatccccaataacccactcgtccttgtggatggatcttcttatctttatcgt
gcgttttatgcaccaccacatttgactaattcaaaaggcgaagcaacaggtgctgtttat
ggtgtagtcaatatgcttcgcagcttaatgagtcgctataaccctagccatattgcagtg
gttttcgacgctaaaggaaaaacattccgtaatgatatgtatagtgagtacaaagcacag
cgtcctcctatgccggatgatttacgctcacaaatcgccccacttcacgccattattcat
gcgctgggattacccctaatttgtattccaggtgtcgaagctgatgatgtcatcggtact
attgcactaaaagccagtaaagaaggccgcgccacccttatcagcacgggtgataaagat
atggcgcaattagttgatgacaatgtcacactcattaataccatgacagataccattatg
ggcccagctgaagtaaccgaaaaatttggcgttggacccgagctcattatcgacttattg
gccatgatgggtgataaagccgataacataccaggcttaccaggtgtcggagaaaaaacc
gcattggcaatgctgacaggtgtaggaggtgtcgataagctaatcgcaaatccacaaagt
gttttagatgtgacattccgtggctctaaaaccatgcctaaaaagattgaagacaacaaa
gaaatgcttcaattatcttacgatcttgcgaccatcaaaaccgatgttgaatgggatgat
gattgggcgcctctcgaaattcaaccacaaaaccgtgacgagttaattaaactgttcggg
gaaatggagtttaaacgctggttagctgaggtgttagataacaaatctgccttttctaca
gctacagccaccacgactaacgaagtccaagaggctacaccagccattgatgttgaatat
gagacaatactaaccgaaactgatttagctaattggattagtaaactgtctaaagctgaa
ctcattgcagttgataccgaaaccaccagcttaaattatatggaagctaagctagttggc
atttcgtttgccattgaagcgggcaaagccgcttaccttccactagcacacgattattta
gatgcacctgagcaacttcctatggaatatgctttagagcaactaaggcctattcttgaa
agtgatagcatcaaaaaagtcggccaaaaccttaagtacgacatcagtatttttgccaat
gctgggatcaccctaaaaggggtccagtttgatactatgcttgagtcttacgtatttaac
tctgtcgcttcacgccatgatatggatggattagcgcttaaatacttaggccataaaaat
attagctttgaagaaattgcaggtaaaggtgcaaagcagctgacttttaaccaaatcgaa
ttagatgtagccagcccttatgcagcagaagatgctgatattaccttacgtttgcaccaa
catttatggccaagagtagaaaaagaagccaagctaacttcggtatttaacgatctagag
ctgccgcttattcaagtgttatcagacattgagcgccaaggtgtattgattgatagcatg
ctgctgagccagcaaagtgatgagttagcccagaaaattgatgagcttgaaaccaaggcc
tatgacattgctggcgagaagtttaatttaagctctccaaagcaactacaagcgttattt
tttgagaagctcggatacccgatcatcaaaaaaacgccaaaaggcgcaccatctacagct
gaagatgtattgattgaattagcattagactacccgttacctaagttaattttacaacac
cgcagtttatccaaactgaaaagcacatataccgataagcttcctttaatggtcaatact
gaaacgggccgagtacatactagttaccaccaagctaatgccgctacaggtcgtttatca
tcaagcgagcccaacctacagaacatccctatccgaacagaggaaggtcgtcggattaga
caagcgtttatcgcaccagaaggtcgtaaagttctggctgctgattactctcaaattgaa
ctgcgtattatggctcacttatctcaggataaaggtttattgaccgctttcgctgagaat
aaagatattcacaaagctaccgcagctgaagtctttggcgttcactttgaagaagtcacc
actgagcagcgccgccgtgctaaagcggttaatttcgggctaatctacggtatgtcagcc
tttggactggctaagcaattggatattccacgtaaagaagctcaaacctatatcgatacc
tactttgctcgatatcctggagtgcttaaatacatggaagacacgcgcgcgcttgctgcc
gaagtcggctatgttgaaaccctatatggaagaagattgtatctgccagatattaaagac
cgtaatgctatgcgacgccaagccgctgagcgggcagcaattaacgccccaatgcaaggt
acagcagctgacatcattaaaaaggcgatgatcaccatcgaccaatggattaagtcagag
acaaacggcgaaataaccatgatcatgcaagtacacgatgagttggtattcgaaattgat
gaatcaaaagcagatgcactacaggcaaaagtatgtgaattgatggctcaagcagcaagc
cttgatgtgaccttattagctgaagctggtatcggtgacaactggcatgaagcgcattag
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