Shewanella japonica: SJ2017_0214
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Entry
SJ2017_0214 CDS
T04959
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
sja
Shewanella japonica
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sja03021
]
SJ2017_0214
Transcription machinery [BR:
sja03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SJ2017_0214
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
UCR_14kD
EcoRI
Motif
Other DBs
NCBI-ProteinID:
ARD20563
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All DBs
Position
252584..253447
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AA seq
287 aa
AA seq
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MAFQSQSMSLTVPRGSSSLEAYMQSVTGIEMLGAEEEHELAKRLQETGDLQAAKKLIMSH
LRFVVHVAKGYSGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHWIKAEIHEYV
LKNWRIVKVATTKAQRKLFFNIRKTKKRLGWFSDEEVGMVAENLGVSKKDVTEMESRMAA
QDPAFDLTNDNDDDSSADFAPVHYLEDHSSDVALEVENENWESDSQARLFSAIKTLDERS
QHILRSRWLDDDKTTLQELAATYQVSAERIRQLEKNAMNKLKSCMEI
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atggcctttcaatcgcaatctatgtcactcactgtccctagaggaagtagcagcttagaa
gcatacatgcaatcagtcacaggcatcgagatgcttggggcagaggaagagcatgagtta
gctaaacgtttgcaagaaactggtgatctacaagctgcgaagaaattaattatgtctcac
ttgcgctttgttgtgcatgtggcgaaaggttattctggttatggtttgccgcaagcggac
cttatccaagaaggcaacattggtttgatgaaagcagtaaaacgctttgatcctgatgtt
ggtgtgcgtttggtgtcttttgctgtgcattggattaaagcggaaattcatgagtacgtg
cttaaaaactggcgtatcgtgaaagttgcaaccactaaagcgcaacgtaaattgttcttc
aatattcgtaaaactaaaaagcgcttaggctggtttagtgatgaagaagttggcatggtt
gcagagaatcttggtgtgtctaaaaaagacgttaccgaaatggagtcgcgaatggcggcg
caagatcctgcatttgacttaaccaacgacaatgacgacgacagcagcgctgattttgct
cctgttcattacctagaagatcactcttctgatgtggcattagaagttgaaaatgaaaac
tgggaatcagattcacaagctcgtttattctcagcgattaaaacccttgatgagcgaagc
cagcatattcttcgttctcgctggttagatgacgataaaaccacattgcaagaacttgca
gccacttatcaagtatcggctgaacgtatcagacagcttgaaaagaatgcaatgaacaaa
ttgaaatcttgtatggaaatctaa
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