Shewanella japonica: SJ2017_0372
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Entry
SJ2017_0372 CDS
T04959
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sja
Shewanella japonica
Pathway
sja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SJ2017_0372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sja03019
]
SJ2017_0372
03400 DNA repair and recombination proteins [BR:
sja03400
]
SJ2017_0372
Enzymes [BR:
sja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SJ2017_0372
Messenger RNA biogenesis [BR:
sja03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SJ2017_0372
DNA repair and recombination proteins [BR:
sja03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SJ2017_0372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ARD20718
LinkDB
All DBs
Position
411920..413857
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AA seq
645 aa
AA seq
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MRIDSRHMHSSALKWRFLSSAQKMDNHISGSVEAQPQQISVPTPALEQDALGYHLQQIFG
YRDFREGQREIIEQTLNGQDTLVIMPTGGGKSMCYQLPALLLPGLTVVVSPLISLMKDQV
DSLTQSGVAAAYLNSSLPREETVAILRRLHQGEIKLLYVSPERLLRPDFIERLHELQVSL
FAIDEAHCISQWGHDFRPEYAALGQLKQIFPYIPLMALTATADQATRESICQRLHITPFC
LLSSFDRPNIRYTVVEKLNAANQLKQFLQLQKGSNGIIYCSSRRRVDEVADRLKLQGFSA
AAYHAGMTQEERVDIQDKFLKDKIDIVVATVAFGMGINKSNVRFVVHYDIPKSVESYYQE
TGRAGRDGLDAEAYMLFDPADIGRVKHLIEQSEPGPQQDVEFHKMNTMAAFAEAQTCRRQ
VLLHYFDESADKPCGNCDVCIDPPKKYDGSEDAKKVLSCIFRLNQHFGVNQVIDVLRGSK
AANVMDRGHNKLSTWGIGKEQSHEYWLSVTRQLIHLGLASQDITRGSSVKLNESARAVLK
GEVTLQLAEPRIQLVTTKRRSSASRAPQQYDRKLFARLKLLRRELAEEHDVPPYLVFNDA
TLAEMAAMVPTSAGEMLAVNGVGERKLSRFGNAFLDEISQYLIES
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
ttgcgcattgattcgagacatatgcacagcagtgctttaaaatggcgcttcttatcttca
gctcaaaagatggacaatcatatctcaggttcagtagaagcacagccgcagcagatttca
gttcccactccagcattggagcaggacgcactcggctatcatttacaacagatatttggt
tatcgtgacttcagagaaggtcagcgtgagattattgagcaaacgttaaacggccaagac
acattagttatcatgcccacaggtggcggtaaaagtatgtgttatcagctgccagcttta
ttactgccagggttgacagtagtggtgtcacctttgatttctttgatgaaagatcaagtg
gacagcttaactcaatctggggttgcggcagcttatttgaactcatccttacctcgtgaa
gaaacggtggcaatactacgtcgtttgcatcaaggtgaaattaagctgctatatgtatcg
ccagagcgcttacttcgtcctgactttattgagcgtttacatgaattacaggtatctctg
tttgccattgacgaagcgcattgcatcagtcaatggggccatgattttagacctgaatat
gccgcccttggtcagctaaaacagatatttccatacattccactgatggcattaacagct
acagctgatcaagcaactcgtgagagtatttgccagcggcttcatatcacgccattttgc
ttattatctagctttgacagacctaatatccgttacactgtggtcgaaaagctcaatgct
gctaaccagctaaagcagtttttacaactgcaaaaaggcagtaatggcattatctactgc
agtagtcgacgccgtgttgatgaagttgctgatcgcctcaagctgcagggcttcagcgct
gctgcgtaccatgcgggtatgacacaagaagaacgtgttgatattcaagataaattttta
aaagataaaatcgatattgtagtggcaactgttgcctttggcatggggattaataaatcc
aatgtccgctttgtagtgcattacgatattccgaaaagcgtggagtcttactaccaagaa
acaggccgagcaggacgagatggcttagatgctgaagcttacatgttatttgaccctgct
gatattgggcgcgtgaagcatttaattgagcaatctgagccaggtccgcaacaagatgtg
gagttccataaaatgaataccatggcggcgtttgctgaagcgcaaacatgccgccgtcag
gtattactgcattactttgatgaaagtgctgataagccttgtggtaactgcgatgtctgt
attgacccgcctaaaaagtatgatggcagtgaagatgctaaaaaagttttgtcttgtatc
tttagactaaaccagcattttggggtgaatcaggtcattgacgtgttacgtggctcaaaa
gcggccaatgtgatggatcgtggccataataagttatccacttggggaattggcaaggag
caaagccatgagtattggttgtcggttacacgtcaactcattcaccttggactggcttca
caagatattacccgtggttcatctgttaagctaaacgaatcagcaagagccgtgttaaaa
ggcgaggtgacattgcaacttgcagagcctcgtattcaattagtgaccactaaacgtcgc
agtagcgcctctcgtgcgccgcagcaatacgacagaaagctttttgcacgcctgaaatta
ctacgaagagagctggccgaagagcatgacgttccgccatatttagtattcaatgacgca
acattagcagaaatggcggcaatggtacccacgagcgccggagaaatgttagcggtgaat
ggtgttggtgagcgtaagttaagccgatttggtaatgcctttttggatgaaattagccaa
tacttaatcgaaagctag
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