Shewanella japonica: SJ2017_0485
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Entry
SJ2017_0485 CDS
T04959
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sja
Shewanella japonica
Pathway
sja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SJ2017_0485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sja03019
]
SJ2017_0485
03009 Ribosome biogenesis [BR:
sja03009
]
SJ2017_0485
Enzymes [BR:
sja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SJ2017_0485
Messenger RNA biogenesis [BR:
sja03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SJ2017_0485
Ribosome biogenesis [BR:
sja03009
]
Prokaryotic type
rRNA helicases
SJ2017_0485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ARD20823
LinkDB
All DBs
Position
complement(563457..565271)
Genome browser
AA seq
604 aa
AA seq
DB search
MSSDERTFRELGLSENLLRALDDLGYEKPTPIQAASIDPLMEGKDILGQAQTGTGKTGAF
ALPLLNSVDQKLNAPQILVLAPTRELAVQVAEAFGSYAKHMKGFHVLPIYGGQSMHQQLS
ALRRGPQVVVGTPGRVMDHMRRGTLKLDALKALVLDEADEMLKMGFIDDIEWVLEHKPAE
SQLALFSATMPEQIKRVANKHLNKPVHISIAASHTTVESIEQRFVQVSQHNKLEALVRVL
EVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILI
ATDVAARGLDVERIGHVVNYDIPYDSEAYVHRIGRTGRAGRTGMAILFVTNREMRMLRTI
ERATNSRISPMKVPSPETVTERRLSRLGEQVQETINGDLDFMKNAVAELCQQLEIDTDLL
AAALLQQVQAERPLQLPPIQERQRDSRDRDRDGGRDRNSRRDSRGGRPMPTSFGSAEGLK
DKPDVKMCRYVIEVGRDNGVGVGNIVGAIANEANIDSQFIGQIQLFDQVTSIDLPDGMPK
DVLTHLRKVRVCGKPLNIKEASDTPFPESTRSDRPRRPRNDRSRGDRNDRPRGDRRPRKP
RDSE
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgatgaaagaactttccgcgaacttggtttatccgagaatttgcttcgtgcc
cttgacgatttaggttacgaaaaaccaacaccaattcaagctgctagtatcgatccttta
atggaaggtaaagatattttaggccaagctcaaactggtactggtaaaactggtgcattc
gcactaccactacttaatagtgtcgatcaaaaactcaatgctcctcaaatcttagtattg
gctcccactcgtgagttagcagtacaggttgctgaagcatttggtagctacgctaaacac
atgaaaggcttccatgtactacctatttacggtggtcaaagcatgcatcaacaacttagt
gcgctacgtcgtggcccacaagtcgttgttggtacgcctggtcgtgtaatggaccacatg
cgtcgtggcacactgaaacttgatgcgcttaaagcattagtacttgatgaagctgatgaa
atgctaaaaatgggcttcatcgacgatatcgaatgggtacttgagcacaagccagctgaa
agccaattagcacttttctctgcaactatgccagagcaaatcaagcgtgttgctaacaag
caccttaacaagcctgttcatatcagcatcgcagcaagtcatacgactgttgaatctatt
gaacaacgttttgttcaagtatctcaacacaacaagcttgaagcattagtccgtgtatta
gaagttgaaaatacagaaggtattatcatcttcgtacgtactcgtaatagctgtgttgaa
ctagcagaaaaattagaagctcgtggttacgcttcttcaccattacatggtgacatgaac
caacaagcacgtgaacgtgctgttgaccagctaaaacgtggcaagctagatattcttatt
gcgacagacgttgcagcccgtggtcttgacgttgaacgtattggacacgtagtaaactac
gatatcccatatgattcagaagcttatgtacaccgcattggtcgtacaggtcgtgctggc
cgtactggtatggcaattcttttcgttactaatcgtgaaatgcgtatgttacgtaccatt
gaacgtgcaacgaacagccgtatttcgccaatgaaagtacctagcccagaaacagtaaca
gagcgtcgtttatctcgtttaggcgaacaagttcaagaaaccattaatggtgacttagac
ttcatgaaaaacgcagtagctgaattatgtcaacagcttgaaatcgatacagatttactt
gctgcggcattattacaacaagttcaggctgaacgtcctttacaacttcctccaattcaa
gagcgtcaacgtgattcacgtgaccgcgatcgtgatggtggcagagatcgcaacagccgt
cgtgattcacgtggtggccgcccaatgcctacaagctttggtagtgcagaaggcttaaaa
gataagcctgatgttaaaatgtgtcgttacgtaattgaagtaggccgtgataatggcgtt
ggtgtaggtaacatcgttggtgcaattgctaacgaagctaatatcgacagtcagttcatt
ggtcaaattcagttattcgaccaagtgacttcaattgacttaccagacggtatgccaaaa
gatgtgttaacacaccttcgtaaagtacgtgtttgtggtaagccacttaacatcaaagaa
gcaagtgacactccattcccagagtctacacgtagcgaccgtccacgtcgtccacgtaat
gaccgttctcgtggtgatcgtaatgatcgtcctcgtggcgaccgtcgtccacgtaaacca
cgtgacagcgagtaa
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