Shewanella japonica: SJ2017_0625
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Entry
SJ2017_0625 CDS
T04959
Name
(GenBank) toxin ABC transporter
KO
K12541
ATP-binding cassette, subfamily C, bacterial LapB
Organism
sja
Shewanella japonica
Pathway
sja02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
SJ2017_0625
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sja02000
]
SJ2017_0625
02044 Secretion system [BR:
sja02044
]
SJ2017_0625
Transporters [BR:
sja02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC-BAC subgroup
SJ2017_0625
Secretion system [BR:
sja02044
]
Type I secretion system
Adhesin protein transporter
SJ2017_0625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
AAA_21
SMC_N
Motif
Other DBs
NCBI-ProteinID:
ARD20963
LinkDB
All DBs
Position
complement(748747..750429)
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AA seq
560 aa
AA seq
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MRENFSLLSKNKAFPELFLSSTFINLLSLALPFTMLQIYDRILPNQGYGTATILVSGVAV
AILLELLLRYGRSWILAASAANFELSTTSDVVDKLMKANYRHVEAMGTGRIANGLASISS
MRELYSGQAIVALMDFPFVLIFLALVAYIGGPLVFIPIAVWVVVGALVYYIGKQLALATH
DLALSDAERTRMLILVLSGLTTAKALSLEDRLSGIYNNINYQRLDNQQRVDWLSAKLQEV
IQGASQGTTLILVMLGCLEVLNGSLTTGGLAACSILAGRAIAPLSAIISLRSRLVSAQTA
MSHVNDLTEIPAEPFTGETLYHQKLPFGPIQFTTVCSQNLGTVIDNFSTKIEPNNLVNLQ
SNPLSHASHILSMIAGFQQITSGAVTIDGTPIYQHNATEFRQSVTYVAPWPTLFAGSLLE
NMTMFRAEYEPQAMAVADSLGLTNAIAQLPNGYQTLVADSDSQMLNKGAIKLIAIVRAVV
QQPSILLLDEPMISLDADAQNRLIALLKELKQHMTIVTASHYVALSQICDQNIDIIGHSE
PSSEQTPSQAVSQANKENRS
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgcgggaaaacttcagtttactttccaaaaataaagcctttccagagctttttttatcg
tcgacttttattaatttattgtcgctcgccttgcctttcaccatgctacaaatttatgac
cgaattttacctaatcaaggttacgggactgcgactattttagtatcaggagtcgccgtc
gctattttgcttgaactgttacttaggtatggtcgtagttggattcttgcagcatcagca
gccaacttcgagttatcaacaacatctgatgtcgttgataagctcatgaaagctaattat
cgccatgttgaagccatgggtactggtcgtattgccaacggcctcgccagtatttctagt
atgcgagaactttactctggacaagctattgttgctttgatggacttccctttcgtcctg
attttccttgccttagtcgcctatataggcggccctttagtctttattccaatagccgta
tgggttgttgtaggcgcattagtttattacataggcaagcaattagccttagccacccat
gatttagcactgtcagatgctgagcgaactcgaatgctgattttagtgctgtctggctta
actacagccaaagctttatctcttgaagaccgactgtctggtatttataacaatatcaat
tatcaacgattagataaccaacaacgggtagactggctatcagcaaaactccaagaagtc
attcaaggtgcatctcagggaaccacgttgatacttgtcatgcttggttgtctggaagtg
ttaaatggctctctcacaacgggtgggcttgccgcttgttcgattttagcaggtagagct
attgccccattaagtgccatcattagtttacgctcaagacttgttagtgctcaaacggcg
atgtcacacgttaatgacttaactgaaattcccgctgagccttttacaggcgaaacccta
tatcatcaaaagcttccttttggcccaatccaatttacgaccgtgtgtagtcaaaacctc
gggactgtaattgataatttttccacgaaaattgaacctaataacttggtgaatcttcaa
tctaatccgctaagtcatgcaagccatattttaagcatgattgcaggatttcagcagatt
acttcaggtgcggtgacaattgatggcacaccaatctatcagcataatgccacagaattt
agacaatcagtcacttacgttgcgccttggccgacactatttgcgggaagcttattagaa
aacatgaccatgtttcgggctgagtatgaaccacaagccatggctgttgcagatagccta
ggtttaactaatgccattgcccaactgcctaacggttatcaaacgctcgtcgcagacagt
gatagccaaatgctcaacaaaggggcgataaaacttatcgccatagtgcgagctgtggtt
cagcaaccttcaatactgcttctagatgaaccgatgatttcattagatgccgatgcgcaa
aatcgtttaatagctttactcaaagagctaaaacagcacatgactatagtgaccgcatca
cattatgtagcgcttagccaaatatgcgatcaaaacattgatatcatcggccatagcgaa
ccttcttcagagcaaacgccttcccaagcggttagccaagctaataaggagaaccgctca
tga
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