Shewanella japonica: SJ2017_0669
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Entry
SJ2017_0669 CDS
T04959
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
sja
Shewanella japonica
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sja03021
]
SJ2017_0669
Transcription machinery [BR:
sja03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
SJ2017_0669
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ARD21007
LinkDB
All DBs
Position
complement(791332..794238)
Genome browser
AA seq
968 aa
AA seq
DB search
MPFALGQRWISDTESELGLGTVVAVEGRMVTVLFPAADENRLFSRDEAPLTRVIFNPGDS
IESHEGWKLTVSEVEEKDGLVTYIGIHSESEETVRLRETLLNHNIRFNKPQDRLFAGQID
RLDRFGMRYQSQLLRHKLATSDLLGQQGPRVGLIPHQQWIAHEVGRRYAPRVLLADEVGL
GKTIEAGLIIHQQLLTGRAERILVIVPDTLRHQWLVEMLRRFNLKFSIFDEDRCVEAYAD
NDNPFYTEQLVICSLELLRKKRRLEQAIDADWDLMVVDEAHHLEWSETAPSRAYQIVEAL
SEEVPGVLLLTATPDQLGHQSHFARLRLLDPDRFYDYNAFLEEEKSYQSVAEAAEALTAN
TKLADSAINSLTELLSEKDIMPSINIIQADDIEDDTKQSAREELLQELLDRHGTGRILYR
NSRASVSGFPKRFFNPQPLAMPQEYITAERVNAMMGSKKSPQDQAKQSLSPEKLYQAFET
DSASWWKFDPRVDWLIDFLKEHRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMS
IIERDKAGAYFAQEEGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRLDR
IGQQNDIQIHLPYLQDTAQERLMNWYHQGLNSFELTCPSGHILYSEFADELTAVLNDDDP
ELMTQLLNHTQARYQELKQAMEKGRDKLLEINSHGGEQSKQLVERLAERDADTHLIGSVI
RLWDIIGVDQEDRGENSIVLRPSEHMLFPSYPGLPEDGISVTFDRETALSRDDIAFISQE
HPLVQTALDMITDSETGTTSVAVLKNKALPAGTLFLELIYMADVSAPKSSQLYRYMPPTP
IRVLLDKNGQNLAEKVDYSSFDKQLSAVNRHIASKLVNASQPILHPLLAKGEEQAQAALA
NLVEQAREKMTTQLNGELTRLESLKAVNPNIRDSELDYIRNQMAELNSYIDDSQFQLDAI
RMVLVSHV
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccgtttgctttaggtcaacgttggattagtgataccgagtcagagcttggtttaggt
actgtcgtcgccgttgaaggtcgcatggtaacagtgttatttcctgccgccgatgagaac
cgtcttttttcacgcgatgaagcaccattaacacgtgtaatctttaatccaggtgactca
attgaaagccacgaaggctggaaactcactgtcagcgaagtcgaagaaaaagatgggcta
gttacctatatcggtatccacagtgaatctgaagaaacggtacgtttacgtgagacttta
ctcaatcacaatatccgttttaataaacctcaagaccgtttatttgcagggcaaattgat
cgcttagaccgctttggtatgcgttaccaaagtcagttactgcgccataagttagcaaca
tctgatttattggggcaacaaggaccacgggtaggcttaattccacaccaacaatggatt
gctcatgaagttggccgccgctatgctccacgtgttttactggccgatgaagtgggttta
ggtaaaaccattgaagcaggtttgattattcaccagcagctacttactggccgtgctgag
cgtatattagtgattgtgcctgacacattacgccatcagtggttggtcgaaatgctacgc
cgctttaacttaaagttttcaatctttgatgaagaccgctgtgttgaagcttatgcggat
aatgacaacccattttacactgagcaattagtcatatgctcacttgagttacttcgtaaa
aaacgtcgtttagaacaagccattgatgccgattgggatttaatggtggttgatgaggca
catcatctggagtggagcgaaacagctccaagccgtgcttatcaaatcgttgaagcctta
agtgaagaagtgccaggcgtattgctacttactgcaacccctgatcaacttggccaccaa
agtcattttgcacgtttacgtttactcgatcctgatcgtttctacgactacaacgcattt
ctagaagaagagaaaagctatcaaagtgttgctgaagctgctgaagcactgaccgccaac
actaaactggccgatagcgccattaatagcttaactgagcttttgagtgaaaaagatatc
atgccaagcatcaatattatccaagcagatgatattgaagatgatactaaacaatctgct
cgagaagagttattacaagaattactcgaccgacatggtactggccgtattttataccgc
aatagccgtgcttcagtcagcggatttccgaaacgctttttcaatccgcaaccattagcc
atgccgcaggaatacattactgctgaacgtgttaatgcaatgatgggatcgaaaaaatca
ccacaagatcaagctaagcaatcattaagccctgagaaactttatcaagcatttgaaact
gatagtgcaagttggtggaagttcgatcctcgtgttgactggttaattgatttccttaaa
gaacaccgcagcaaaaaagtactcatcattgccagccaagcagaaactgcgctgagcctt
gaggaagcattacgtactcgtgaaggtattcaggccactgttttccatgaaggcatgtcg
attattgaacgtgataaagcgggtgcgtattttgcccaagaagaaggcggcgcccaagcg
cttatttgttcagaaattggctcagaaggacgtaacttccaatttgctagccacttagtg
ttatttgatttgccactaaacccagatttattggagcagcgtatcggtcgtttagaccgt
atcggtcagcaaaatgatatccaaattcatttaccgtatttgcaagatactgcgcaagag
cgcttaatgaattggtaccaccaagggcttaattcttttgagctgacttgcccaagtggg
catattctttattcagagtttgccgatgaattaacagcagtgctcaatgatgatgaccct
gaattaatgacgcaactgcttaaccacacccaagccagataccaagagcttaaacaagcc
atggaaaaaggacgtgataagttattagaaattaactctcatggtggcgaacaatcaaaa
cagttagtggagcgtttagccgagcgagatgctgatactcacttaattggttctgtaatt
cgtttatgggacattattggtgtcgatcaagaagatcgtggcgaaaactcgattgtattg
cgcccgagtgagcacatgttattcccgtcatatcctgggttacctgaagatggaatttca
gtgacatttgaccgtgaaaccgcactttctcgtgacgatattgcgtttatttctcaagag
catccattagtgcaaacggctcttgatatgatcaccgattcagaaaccggcactaccagt
gttgcggtgttaaagaataaagcgctaccagcgggaaccctgttcttagaattgatttat
atggcagatgtttcagcccctaaatcatcgcagctataccgctatatgccaccaacacct
atccgtgtgttactggacaaaaatggtcaaaacttggcagaaaaagtcgactacagtagc
tttgataaacaactcagtgctgttaatcgccatattgccagcaagctcgttaatgcatct
cagcctattcttcacccgctattagcaaaaggggaagagcaagcacaggcagcattagcc
aacttggttgagcaagctcgtgaaaaaatgaccacacaattaaatggcgagctcacccgt
ttagagtctttaaaagcggtgaatccaaatattcgcgattctgaactcgattatatccgt
aatcaaatggctgagttaaacagctatattgacgacagccaattccagctagacgcaatt
agaatggtattagtcagtcacgtataa
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