Shewanella japonica: SJ2017_1181
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Entry
SJ2017_1181 CDS
T04959
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sja
Shewanella japonica
Pathway
sja02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SJ2017_1181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sja03021
]
SJ2017_1181
Transcription machinery [BR:
sja03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SJ2017_1181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
ARD21508
UniProt:
A0ABM6JJH2
LinkDB
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Position
complement(1403791..1405623)
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AA seq
610 aa
AA seq
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MEHTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIVQMINDMGIRVYEQAP
DADEMMMSEDNTDEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEIVIA
KRIEEGINTVQSSVSEYPQAIAMILEQFDKYEADELRLTDIISGFVNPDDDDVAPTATHV
GSELSEEELEDEDDDGDDEDDEEEGPKGPDPEEAKEKFTQLREAYEKGLLVIEKKGRDHP
EAIGALFVIGELFKEFRLIPKQFDRLVKSMRTMMDRVRVQERLILKLCVEQAKMPKKNFV
KFFTGNETDLAWFHAEKDSNKPYAEGLRMVEEDVVRCSTKLAAIEEETGLIIRAIKDINR
RMSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRR
GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEEL
SERMLMPEDKILKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLELPLDSATSESLKNA
THEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR
SEILKSFLDE
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggagcatactccgcagtcgcaacttaaattgttgcttgctaaaggtaaagagcaaggt
tatttaacctatgctgaagtcaatgaccacttgccagctgacatggtcgattcagatcag
attgaagatattgtccagatgatcaatgacatgggtatccgcgtttatgaacaagcgcca
gatgccgatgaaatgatgatgtctgaggacaacaccgatgaagatgcagcagaagaagca
gcagctgcacttgcaacggtagagagcgaattaggtcgcacaaccgatccagtccgtatg
tacatgcgtgaaatgggaacggttgagctattgacccgcgaaggcgaaattgtcatcgca
aaacgtattgaagaaggcattaatacggttcaaagctctgtatctgaatacccgcaagcc
attgcgatgattcttgagcaatttgataagtatgaagctgatgaacttcgtctaactgat
attatttcaggctttgttaacccagatgatgacgatgttgcgccaacagcaacacacgta
ggctctgagttatcagaagaagaactagaagacgaagatgatgacggtgatgacgaggac
gatgaagaagaaggtccaaaaggtcctgatcctgaagaagccaaagaaaaattcacccaa
ttacgtgaagcttacgaaaaaggcttattggtaatcgaaaagaaaggtcgtgatcaccct
gaagccattggcgctttattcgtgattggcgagcttttcaaagaattccgtttaatccca
aaacagtttgatcgcttagttaaaagcatgcgcaccatgatggatcgtgttcgtgttcaa
gagcgtttaatccttaagctttgtgttgaacaagctaaaatgccaaagaaaaactttgtt
aagttcttcacaggcaatgaaactgatttagcttggttccacgctgaaaaagacagtaat
aagccttacgctgaaggcttaagaatggttgaagaagacgttgttcgttgtagcactaaa
ctcgctgcaatcgaagaagaaaccggcttaatcatccgtgctattaaagacatcaaccgt
cgcatgtcaatcggtgaagctagagctcgtcgtgcgaagaaagaaatggttgaagcaaac
ttacgtcttgtaatttctatcgctaaaaaatacaccaaccgtggtttacagttcttggat
ttgattcaggaaggtaacattggtttgatgaaagctgtagataagtttgaataccgtcgt
ggttataagttctcgacttatgcaacatggtggatccgtcaggcaattactcgttctatt
gctgatcaagcgcgtactattcgtattccagtacatatgattgaaacgattaacaaatta
aatcgtatttcacgtcaaatgttacaagaaatgggtcgcgagccaacacctgaagaatta
tctgagcgtatgctaatgcctgaagataagattcttaaagtgttaaaaatcgctaaagaa
ccgatttcaatggaaacaccaattggtgacgatgaagattcgcacttaggtgactttatt
gaggataataccttagagcttcctttagactcagcgacaagcgaaagtttaaagaatgcg
actcacgaagtattagctggtctaacagcccgtgaagctaaagtattacgtatgcgtttt
ggtatcgatatgaacaccgaccatacgcttgaagaagtcggtaaacagtttgacgtaaca
cgtgaacgtattcgtcagattgaagcgaaagcattgcgtaaactacgccacccttctcgt
tcagaaatcttaaagtcgttcttagacgagtaa
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