Shewanella japonica: SJ2017_1235
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Entry
SJ2017_1235 CDS
T04959
Name
(GenBank) ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
sja
Shewanella japonica
Pathway
sja03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
SJ2017_1235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sja03019
]
SJ2017_1235
03009 Ribosome biogenesis [BR:
sja03009
]
SJ2017_1235
03036 Chromosome and associated proteins [BR:
sja03036
]
SJ2017_1235
Enzymes [BR:
sja01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
SJ2017_1235
Messenger RNA biogenesis [BR:
sja03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SJ2017_1235
Ribosome biogenesis [BR:
sja03009
]
Eukaryotic type
90S particles
RNase
SJ2017_1235
Prokaryotic type
rRNA processing factors
SJ2017_1235
Chromosome and associated proteins [BR:
sja03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
SJ2017_1235
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
RM44_endonuclase
DND1_DSRM
DSRM_2
Motif
Other DBs
NCBI-ProteinID:
ARD21560
UniProt:
A0ABM6JID7
LinkDB
All DBs
Position
1461927..1462607
Genome browser
AA seq
226 aa
AA seq
DB search
MEPIKNLPRLCRTLGYEFKNIDLLTHALTHRSASSKHNERLEFLGDSILSIVISDALYHQ
FPKVTEGDLSRMRSTLVKGETLTVIAKEFKLGDYLYLGPGELKSGGFRRESILADAVEAI
IGAIYLDADIETCRRLLLTWYKQRLAEIKPGINQKDPKTILQEYLQGYKKPLPEYNVVDV
KGDAHNQTFTVECRISELDKVVTGVSTSRRKAEQLAAAQVLELINK
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atggaaccaattaaaaatttaccccgtttatgtcgcacattaggttatgagttcaagaat
atagatttactgactcatgctttaactcatcgtagcgcatcatcaaagcataatgagcgt
ttggagttcctaggtgattcgattttatctattgtgatatctgatgctttatatcaccag
tttccgaaagtcacagaaggcgacttaagccgtatgcgttcaaccttagtgaaaggtgaa
acgttaaccgtgattgcaaaagagtttaaattaggtgattacctttatttagggcctggt
gagttaaaaagcggtggttttagacgggaatctattttagccgatgctgtagaagccatc
ataggtgcgatatacctggatgccgatatcgaaacgtgtcgacgcttactactgacatgg
tataagcaacgattagctgagattaaacctggtataaatcaaaaagatcctaaaaccatt
ttgcaagagtacttgcaaggctataaaaagccattgcccgaatataatgtggttgatgta
aaaggtgatgcgcataatcagacgttcacggtcgaatgtcgtatttctgaattagataaa
gtagtgacgggtgtcagtacttcaagaagaaaagctgagcagcttgcagccgctcaggta
ttggagttaattaataaatga
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