Shewanella japonica: SJ2017_1237
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Entry
SJ2017_1237 CDS
T04959
Name
(GenBank) DNA repair protein RecO
KO
K03584
DNA repair protein RecO (recombination protein O)
Organism
sja
Shewanella japonica
Pathway
sja03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SJ2017_1237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sja03400
]
SJ2017_1237
DNA repair and recombination proteins [BR:
sja03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SJ2017_1237
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SJ2017_1237
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecO_C
RecO_N
Motif
Other DBs
NCBI-ProteinID:
ARD21562
UniProt:
A0ABM6JHV7
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Position
1463701..1464360
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AA seq
219 aa
AA seq
DB search
MIVNLLVDGVGRIDALVRVGSGKKNLKSIIQPFQPLIFQFNSKSDTSDSSLKFITQIEPA
APALPLTSSSLYSAMYLNELLVRVLDSGQHAEGLFIHYHRCIMSLASEFSSEHLRYFEME
LLAELGALPSLDYDTQGEKIEPVMSYRIIADEGFLPVAQQASTHITHSKQLLSGEMLINL
KAKTLTPENLVQAKGLMRLLLSPLLGTKPLLSRKLFIKK
NT seq
660 nt
NT seq
+upstream
nt +downstream
nt
gtgattgttaatctgttagtcgatggtgttggtcgcatagatgcacttgttcgggtgggc
agtggtaaaaaaaatcttaaaagtatcattcaaccttttcagccactgatatttcaattc
aattcaaaatctgatacttcagattcaagccttaaatttataacccaaatagagcctgct
gcccctgcattaccgttaacttcttccagcttgtattctgcgatgtatcttaatgagttg
ttagtaagggtacttgattctggacaacatgcagaaggtctatttattcattatcaccgt
tgcattatgtcgcttgcgagcgaatttagctccgagcatctgcgatattttgaaatggaa
ttattagctgaactaggggcgttaccttcattagattatgatactcaaggtgaaaaaatt
gaaccagtgatgagttaccgtattatcgctgatgaaggttttttacctgttgctcagcaa
gcgagcacgcatattacccacagtaagcaactgttatcaggcgaaatgctgattaacctt
aaagctaagacattgacgcctgaaaacttggtacaagcaaaagggctaatgagattactt
ttgtcaccgttattggggacaaagccattactaagtagaaaactatttattaaaaaataa
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