Shewanella japonica: SJ2017_1416
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Entry
SJ2017_1416 CDS
T04959
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sja
Shewanella japonica
Pathway
sja03030
DNA replication
sja03430
Mismatch repair
sja03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SJ2017_1416
03430 Mismatch repair
SJ2017_1416
03440 Homologous recombination
SJ2017_1416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sja03032
]
SJ2017_1416
03400 DNA repair and recombination proteins [BR:
sja03400
]
SJ2017_1416
Enzymes [BR:
sja01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SJ2017_1416
DNA replication proteins [BR:
sja03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SJ2017_1416
DNA repair and recombination proteins [BR:
sja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SJ2017_1416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ARD21740
LinkDB
All DBs
Position
1673998..1677471
Genome browser
AA seq
1157 aa
AA seq
DB search
MSDPRFVHLRVHSDFSMSDGVAKVKPILAKASELGMGALAITDQNNFCGLVKFYGGCHGA
GIKPIIGADFWMKVPGFADEYCAITIIALDNDGYQSLTQLISEAYLRGQLNGRVVIDQEW
LVKFNQGILLISGAKDGDIGKALLKGNMAQVEELVSFYKTHFHDRYFLELIRTGRPDEER
YLHMAVKLASENELPVVATNQVVFLKADDFESHEIRVAIHDGFTLADPRRPKKYSEQQYL
RTEDEMCDLFADIPSALSNSVEIAKRCNVTIRLNEYFLPNFPTGDLTIEDFLVEVSEKGL
EERLEFLFPDEQERKEKRPEYDERLDVELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAD
LYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVERLTKMIPAEPGMTLAKAFEVEPS
LPEAYNGDEDVKELIDMCRRLEGVTRNAGKHAGGVVISPTVITDFSPLYCDAEGLNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPRLEKAGEEPVRIESISLTDPKSFRLL
QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSYPDAEYQHESLKDLLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRGTFEAGAIKNGVDGPLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMSADMDNTDKIVILVDECERMGLPIIPPDVNKGLFKFTVDDDLNIVYGIGAIKG
VGDGPVESILNARKDGPFTDLFDFCARIDLKKLNKRVIEKLICAGALDNLGPHRAAMMAT
LPEAILAAAQHAKAEAIGQNDMFGLLNSEPEDNKQSFVECPTWPDKVWLEGERDTLGLYL
TGHPINQYLKELRQYTSGRLKDVHPTDRGKTVKAAGLVIATRVMITKRGSKMGLVTLDDK
SARLEVMLFTEAFEKFNHLLEKDRILICEGEVSFDDFAGGNRMTARNIIEIGEARSHFAN
AVEINVTAEDINPEWLEKFEQALSPWKNGSVPVVINYQQREAAGQLRLGDEWRVNPTDEL
MLAIESLVGSSNVKIVF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcctcgtttcgtccatctccgtgttcacagtgatttttccatgtctgatggc
gtggcaaaagttaaacctattctggcgaaagcctcagaacttggtatgggagcattagca
attactgaccagaataacttttgtggtctagtaaaattctatggcggttgtcatggcgcg
ggaataaaaccgattatcggcgctgacttttggatgaaagtgccaggttttgcagatgaa
tactgtgctattaccattatcgccttagacaatgacggttatcaaagcttaactcaatta
atcagtgaagcgtatttacgtggccaacttaacggcagagtggtcatcgatcaggaatgg
ttagttaaatttaatcaaggcatcttgctgatttcaggtgctaaagatggcgatattggt
aaagcgctattgaaaggtaacatggcgcaagttgaagagctggtgtcattctataaaacc
cacttccatgatcgttactttttagagttgatcagaacgggcagaccggatgaagaacgt
tatcttcatatggctgttaaactggcttcagaaaatgaattacctgttgttgcaactaac
caagtggtgtttttaaaagctgacgactttgagtctcacgaaattcgggttgcgattcat
gacggctttacgttagccgatcctcgtagacctaaaaaatacagtgaacaacaatatctc
cgaaccgaagatgaaatgtgtgatttgtttgctgatattccatctgcattatcaaacagt
gttgaaattgccaaacgctgtaatgtcacgattcgcttaaatgaatatttcttacctaat
ttcccaacaggcgatttgaccattgaagactttttggttgaagtgtctgaaaaaggtctg
gaagagcgtttagagtttttattccctgacgagcaagagcgtaaagagaaacgtcctgag
tatgatgaacgtctcgatgttgaactaaaagtgattaaccaaatggggttccctggttac
ttcttgatcgtaatggagttcattcaatggggtaaagataatggcatacctgttggaccg
ggacgtggctctggtgccggttctttagtggcttatgcgcttaaaattactgacttagat
ccattagaatacgatttgttatttgaacgtttcttgaaccctgaacgtgtatccatgccc
gatttcgacgttgacttctgtatggatcgccgtgatgaggtaattgaccacgttgccgat
ttatatggccgtgatgcagtttctcaaattattaccttcggtacgatggcggcaaaagcg
gtagtacgagatgttgggcgagtgttaggtcatccttatggttttgttgaacggcttacc
aaaatgatcccagccgagcctggcatgacactggctaaagcgttcgaagtcgagccgtca
ctgccagaagcttataatggcgatgaagatgtcaaagagcttattgacatgtgtcgccgc
cttgaaggtgtgacccgaaacgcgggtaaacatgctggtggtgttgtaatttcaccgaca
gtcatcactgacttctcaccactatattgtgatgcagaaggcttaaacccagtgactcag
tttgataaaaatgatgttgaaacggctggtttagttaaattcgatttcttgggattaaga
accctaactattatcgactgggctttgcagatgattaaccctcgcttagaaaaagcaggg
gaagaacccgtcagaattgaatccattagcttgactgaccctaaatcatttagattattg
cagcgttatgaaaccacggcggtattccagttggagtctcgtggtatgaaagacttgatt
aaacgtctgcagcccgattgttttgaagacatgattgcattagtggcgttattccgccca
ggacctttgcagtccggcatggtagacaactttattgagcgtaagcatggccgtgaagaa
gtctcttatcctgatgcagagtatcaacatgagtcgttaaaagacttactagagccgaca
tacggtattattttataccaagaacaggttatgcaaattgcgcaggtattggctggatat
accttaggtggcgcggacatgcttcgtcgtgctatgggtaagaaaaaacctgaagaaatg
gctaagcaacggggtactttcgaagctggcgcaattaagaatggcgttgatgggccattg
tcgatgaaaattttcgacttggtagaaaagttcgcgggttacggtttcaacaaatctcac
tcggctgcttatgcgctagtttcatatcaaaccttgtggctaaaaacccattatcctgca
gagtttatggcagcagtaatgtccgctgatatggataacacggataaaattgtgattttg
gttgatgagtgtgagcgtatgggcttgccaattataccacctgatgtgaataaaggattg
ttcaagtttactgtcgatgacgacttaaacattgtttatgggattggtgcgattaaaggg
gtgggtgatggccctgtagaatcgattttaaatgcgcgtaaagatggcccatttaccgat
ttgtttgatttctgtgctcgtatcgatcttaaaaagctaaataagcgggtgattgaaaag
ctgatttgcgcaggagcactcgataatttaggcccacatcgtgcggccatgatggcgacc
ttacctgaagcgattttagccgctgctcaacatgcgaaagctgaagccattggccagaat
gatatgtttggcttacttaattctgagccagaagataacaaacaaagctttgtcgaatgt
cctacatggcctgacaaagtttggcttgaaggcgagcgtgacacattaggtttatacctt
actggtcacccaattaatcagtatttaaaagagttaagacaatacacttctggacgattg
aaagacgttcacccaactgatcgcggtaaaaccgttaaagctgcagggttagttattgct
actcgagtgatgatcaccaagcgaggctcaaaaatgggcttggtcactcttgatgataaa
agtgcgcgattagaagtcatgttgtttactgaggcatttgagaaatttaatcatctttta
gaaaaagatcgtattttgatttgtgaaggtgaagtgagctttgatgactttgctggcggt
aaccgaatgactgcacgcaatattatcgaaatcggtgaggcgagaagtcactttgctaat
gcggtagaaattaatgttacagctgaggatattaaccctgagtggctggaaaaatttgaa
caagcgctttcgccttggaaaaatggtagcgtaccagtagtgattaattatcagcagcgt
gaagccgcagggcaattacgtttaggggatgagtggcgtgttaaccctaccgatgagctg
atgttagcaattgaaagcttggtcggctcgagtaacgttaagattgttttttag
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