Shewanella japonica: SJ2017_1673
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Entry
SJ2017_1673 CDS
T04959
Name
(GenBank) ATP-dependent helicase
KO
K19789
DNA repair protein RadD
Organism
sja
Shewanella japonica
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sja03400
]
SJ2017_1673
DNA repair and recombination proteins [BR:
sja03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
SJ2017_1673
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA_30
DUF7577
SLFN-g3_helicase
zf-tcix
AAA_22
DZR
T1R_D3-like
AAA_16
Zn_ribbon_3
SNF2-rel_dom
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ARD21986
LinkDB
All DBs
Position
complement(1997753..1999510)
Genome browser
AA seq
585 aa
AA seq
DB search
MTSVISLRDYQQDSVDAAIKHFKQSNDSAVLVLPTGAGKSIVIAELARIARGNVLILTHV
KELVAQNAEKVGLLTQDASIYSAGLNQKKAVGKTVVASVQSAARAPEKFNQTFSLVIIDE
CHRVSNDENSQYWQLLNHLKKNNQQLKLLGLTATPYRLGLGWIFRHHYHGKVGNTEKPIF
EQCIFELPMRPLIKHGYLTAPKIFDGLSAQYDFSQVTPSETGEYPQKEVDDLLDHQGRAT
TAIIKQVVQLAEHRKGVLIFAATVRHAKEIMKLLDDSAALITADTPHTVRDDIISRFKQQ
SLKYIVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMIGRGLRLAKDKEDCLVIDYAAN
GYDLYFPEVGQVKPNSKSVPVQVHCPVCQFANTFWGIVDSDGDIVEHFGRRCQGLVDTKQ
DTQQQCYFRFRSKSCPDCGAENDIAARICQTCQSTLIDPDKRLKQVLSSQHHHLFKCQEM
HLIEDDKKLIVKYFDIDANEFKESFRMETPAQRRALYAIFIAPHSRTPGMKHPQFSSPQQ
VLEHQKHFKTPDLLLLKKQKHKWELVEKFFDYKGRFKTINENSFV
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgacatccgtaatatcccttcgtgattaccaacaagattctgttgatgccgctataaaa
cactttaagcaaagtaatgactccgctgtattagtattaccaacaggtgctggtaaaagt
atcgtgatagcagaacttgcaagaatagctagaggcaatgttttgatattgactcacgtt
aaagagctagtcgctcaaaatgcagaaaaagtgggattactgactcaagatgccagtatc
tattcagctggattaaaccaaaagaaagcggtaggtaaaacggttgtggctagcgttcaa
tcagctgctagggcacctgaaaaatttaaccaaactttctctttggttattattgatgaa
tgtcaccgtgttagtaacgatgaaaatagtcagtattggcagttattgaatcatctgaaa
aaaaataatcagcaactaaaattactcgggttaacggcaacaccatacagattaggacta
ggctggatatttcgccatcattatcacggtaaagtcggcaacacagaaaaacctattttt
gaacaatgtatttttgaattgcccatgcggccacttattaaacacgggtatttaacagca
cctaagatattcgatggcttaagcgcacaatatgattttagccaggtaaccccttcagag
acgggcgaatatccacaaaaagaagtcgatgatttattagatcatcaaggccgagctacc
acagcaattattaaacaggttgtgcaactagcagaacaccgtaaaggcgtgctcatattt
gcggcaacagtgcgtcatgcaaaagaaataatgaagttactcgatgatagtgcagcttta
attaccgctgacacccctcatacagtgcgtgatgatattatttctcggtttaagcagcaa
agtcttaaatacattgtcaacgtagcggtacttactacaggctttgatgctccccatgta
gatttaattgctatcttaaggcctacggcctctgtgagcttatttcagcaaatgattggc
agaggcttacgcttagcaaaagacaaagaggattgcctagtcattgattatgcagctaat
ggatatgatctttattttcctgaagttggccaagtcaaacccaacagtaaatctgtccca
gtacaagtacactgccccgtttgccagtttgctaatactttttggggtattgtcgattct
gacggtgatattgttgaacacttcggacgacgctgccaaggattagtcgatactaaacag
gatacacaacagcaatgttatttcaggtttcgctctaaatcctgccctgattgtggcgct
gaaaatgatattgcagcgcgcatttgccaaacatgccagtcaactctcattgatccagat
aaacgattaaaacaagttttatcctctcaacatcatcatttattcaaatgccaagagatg
catctcatcgaagatgataaaaagctgatagtgaaatatttcgatattgacgctaatgaa
tttaaagaaagctttagaatggaaacacctgctcagcggcgcgccttatatgcaattttt
attgctccacactcgcgcacgcctgggatgaaacatccacaattctcatcaccccaacaa
gttcttgaacaccagaaacattttaaaacgcctgatttgctgttactaaaaaaacaaaag
cataagtgggaattagtggaaaagttttttgattataaaggacgatttaaaaccattaat
gaaaacagttttgtttga
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