Shewanella japonica: SJ2017_2343
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Entry
SJ2017_2343 CDS
T04959
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sja
Shewanella japonica
Pathway
sja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SJ2017_2343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sja03019
]
SJ2017_2343
Enzymes [BR:
sja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SJ2017_2343
Messenger RNA biogenesis [BR:
sja03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SJ2017_2343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Flavi_DEAD
ERCC4
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ARD22633
UniProt:
A0ABM6JK72
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All DBs
Position
2798126..2799565
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AA seq
479 aa
AA seq
DB search
MPFAKLGLSDPITSALNKLGYTEPSPIQAKAIPVALSGKNIIAAAQTGTGKTASFILPIL
ERFKAGQKVRGKRVKALVLAPTRELVVQVEQNIKLYSQNLSINSMVMYGGVDSKQQKQRL
IEGIDILVATPGRLLDMYTQRAVNFDELEVLVLDEADRMLDMGFIEDINRIIELLPDDRQ
NMLFSATLSNQVRALAKSAMKKPVQISVEADTDAQPKIEQWLTTVDKDKKSALLSHLIKE
NDWQQALIFIETKHGAAKLVTQLEKRGIIAESFHSGRSQPIREQILADFKAGKISYLIAT
GVASRGIDIDELPLVINYDLPFPADDYVHRIGRTGRAGAKGLAVSLVSKDDFKNLCAIER
RLGHIIERKEVDGFAPRKEVPISILDFVPKNPKMPNSSKTKSANAGAKTEDDKPRLSRGK
SDKPKNNHYNKNKAKKFNQEDNKKPYENSKSNARKQTRVDSAPTSSVPNGTGAVNPWKQ
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgccatttgcaaaactgggattaagcgatccaatcactagtgcgttgaataaattaggc
tataccgagcctagtcctattcaagctaaagccattcctgttgctctatcgggtaagaat
atcattgctgcagcgcaaacaggcacaggtaaaaccgctagttttattttacccatttta
gagcgctttaaagcgggtcaaaaagtccgagggaaacgagttaaagctttggtactggct
ccaacgcgtgaacttgttgtgcaagttgagcaaaatatcaaactgtacagtcaaaattta
tccatcaattcgatggtgatgtatggtggcgtagacagtaaacaacaaaagcagcgttta
attgaaggtatcgatatcttagtcgccactcctggtcgtttacttgatatgtatacccaa
cgtgctgttaattttgatgagttagaagttttagtcctagatgaagccgacagaatgctt
gatatgggctttattgaagacattaaccgcattatcgaacttttacctgatgaccgccaa
aatatgttgttttcggcaacgctttctaatcaagtacgcgctttagctaaatcggcgatg
aaaaaaccagtgcaaatatcagtcgaagctgacacagatgcacagccaaaaatcgagcaa
tggttaaccacggttgataaagataaaaaatcagcattgttaagccatttaattaaagaa
aatgattggcaacaagccttaatttttatcgaaactaaacatggtgcagcaaagcttgtc
actcaactcgaaaagcgtggcattattgctgaatcattccatagcggtcgtagccagcca
atccgagaacaaattttagcggactttaaagctggcaaaatcagctatttaatcgcaacg
ggggtggcatctcgaggcattgatattgatgaactaccgttagtgattaactacgacctg
ccatttcctgctgacgactatgttcatcgcattggtcgtacgggacgtgctggcgcaaaa
ggcttggctgtttctttagtctcaaaggatgactttaaaaatttatgcgctattgaacgt
cgtttaggccatatcatcgagcgtaaagaagtagacggctttgcacctcgtaaagaagtg
cctatttcaattttagattttgtccctaaaaatcctaaaatgccaaactcttccaaaact
aagtcagcaaacgctggggcaaaaacagaggatgacaaaccacgcttgtcacgaggtaaa
tctgataagcccaagaacaatcattacaataaaaataaagcaaagaaatttaaccaagaa
gacaataaaaaaccctacgagaattcaaaaagtaatgctcgtaaacagacaagagttgac
tcagcacctacatcttcagtcccaaatggcactggcgcagttaacccttggaagcaataa
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