Shewanella japonica: SJ2017_2412
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Entry
SJ2017_2412 CDS
T04959
Name
(GenBank) Exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
sja
Shewanella japonica
Pathway
sja03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
SJ2017_2412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sja03400
]
SJ2017_2412
Enzymes [BR:
sja01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
SJ2017_2412
DNA repair and recombination proteins [BR:
sja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
SJ2017_2412
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SJ2017_2412
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SJ2017_2412
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ARD22702
UniProt:
A0ABM6JLL2
LinkDB
All DBs
Position
2867676..2869034
Genome browser
AA seq
452 aa
AA seq
DB search
MSPAKDRPSQFAGIRTDLDLNIIGEPENFYCKQSTDYLPSPEAILVTGITPQLANQKGMV
ETEFMGRINAIFTQPNTCVVGYNSLRFDDEVSRYGFYRNFIDPYAREWQNGNSRWDIIDL
VRACYAFRPEGINWPLKEDGSPSFKLEHLTQANGLSHEQAHDAMSDVYATIAIAKLIKEK
QPKLYDYYFELRNKKKVAELIQGDFMQPLVHVSSKISAANGCVTLIAPVAPHPTNKNAMI
CINLAMDLSPLIDLTVAEIVERMYTPRNELAPDELPIPLKQIHLNKCPFIGTPKLLSEAV
AQRHQFDMDFARSQYKLFKQHPELRDKMQAVFDVNDHPAVTDPDLMLYSGGFFSHADKAK
MEMIRNTKAENLAALNLDFDDPRLSQMLFRYRARNYPETLSHDESMQWREFCQQRLSDAD
YVINLENLLEETSENEHKQKLLKALCLYLQSL
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
gtgagtccagcaaaagaccgaccgtctcagtttgcaggcattcgaactgatttagatctc
aatatcattggtgagccagaaaacttttattgcaagcaatcaacagactacctgccctca
cctgaagcgattcttgtcacagggataacgccacagcttgcgaatcaaaaaggcatggtt
gaaactgagtttatggggcgcattaatgccattttcactcaaccaaatacctgtgttgtt
gggtataactcattacgatttgatgatgaagtcagccgttatggtttttatcgcaatttt
atagacccttatgcacgtgagtggcaaaacggtaactcacgctgggacattatcgattta
gttagagcctgttatgcattccgtccagaagggattaattggccgcttaaagaagatgga
tcacctagttttaaattagagcatttaacccaagctaatggattgagccatgaacaagct
catgatgctatgagcgatgtctatgcaacgattgcaattgcgaaactcatcaaagaaaag
cagcctaaattatacgattactattttgagcttcgaaataagaaaaaagtcgcagaatta
atccaaggcgacttcatgcagccgctagttcatgtgagttcaaagattagcgctgccaat
ggttgcgtcactttaattgcgcctgtagcacctcatccaacgaacaagaacgcgatgatt
tgcattaatttggcaatggatttaagcccgctcattgacttaactgtggcagaaatcgtc
gaacgtatgtatacacctcgaaatgaattagccccagatgagctgccaattccactaaag
caaatacatttaaacaagtgtccgtttattggtactcctaaactactatcagaagccgta
gcacaaaggcatcaatttgatatggactttgcccgcagccaatataaattattcaaacaa
caccctgagcttcgcgataaaatgcaagcggtgtttgatgtaaatgatcaccctgctgtt
accgatcctgatttaatgctctatagcggaggcttttttagtcacgccgataaagccaaa
atggaaatgatccgcaataccaaagccgaaaacctcgccgctcttaatctcgactttgac
gatcctaggctcagtcaaatgttgtttcgttatcgagcccgtaattaccctgaaacattg
agccatgatgaatcaatgcaatggcgagagttctgtcagcaacgcctttctgatgctgat
tatgtgataaacctcgaaaacttattagaagaaaccagcgagaatgaacacaaacaaaag
ttattaaaagccctatgtttatatctgcaatctctttaa
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