Shewanella japonica: SJ2017_2505
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Entry
SJ2017_2505 CDS
T04959
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sja
Shewanella japonica
Pathway
sja03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SJ2017_2505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sja03400
]
SJ2017_2505
Enzymes [BR:
sja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SJ2017_2505
DNA repair and recombination proteins [BR:
sja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SJ2017_2505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ARD22795
LinkDB
All DBs
Position
2979892..2983374
Genome browser
AA seq
1160 aa
AA seq
DB search
MKNFSVLTPPSVKKGQQFQTLATLGGVSQAITLSSLIQQHSGTTLIVTSDTPAALQLEVE
LGYLLSHYDVNVCLFPDRETLPYDSFSPHQDLISQRLETLAQMSQTQHNVIIVPVNTLMV
KLPPKSFLTANVMLLKKGDTYSLQQVRQHLTDTGYYIVDQVYEHGEFAIRGSILDIFPTG
SDQPLRIELFDDEVESIRYFDAETQRSQQEIDAVRMLPAKEFPTDSAGIEGFRQRYRRRF
EVISKEAESVYQLVSRNLMPAGIENYLPLFFDETANLFDYIPENTQLITLGDIEQASQHH
LSEINSRYEDRRVDPLRPLLAPQELYLLIDELFAQFKRYQRSQFALPSDENDKAQHASVS
ALPDINANHKLKQPLISLQEYNQTHQQLVFCAESEGRREALIELLGKIDIKPKLFNHLDD
YIKAKDPIGLIVSPLSRGCVIHDTPKGDISVICETELFGQRISQQRRREKQKQVSSDVLV
KNLAELKVGEPIVHLEHGVALYQGLVTLDTGGLVAEYLQLEYTGGDKLYVPVSSLHLISR
YSVGADESPTLNKLGNETWAKAKKKAIEKIRDVAAELLDVYARRQARPGDAMKIEAEEYA
QFSQGFPFEETVDQETAIEAVLDDMQAPIAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQ
VVVLVPTTLLAQQHYENFKDRFADWPVVIEVMSRFRSVKEQNGVLKQLSEGKVDIVIGTH
KLLQAEANFDNLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMR
DLSIIATPPAKRLAVKTFVREYDIATVREAILREILRGGQVYFLHNNVETIEKCAQDIRE
LLPESRVVTAHGQMRERELEKVMSEFYHQRFNVLVCTTIIETGIDVPSANTIIIDRADKF
GLAQLHQLRGRVGRSHHQAYAYLMTPHPKLMSADARKRLAAIDALEDLGAGFMLATQDLE
IRGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKEGKEPSLAYMLNSQCEIELRIPAL
LPDDYVSDVNMRLSLYKRIANCETEKMLDELKVEFIDRFGLLPDPTRNLMELTLYKHQAT
ALGASKIEMHAKGGSIEFNDGHKIDPMFIIGLLQSQPQIYRMEGSNKLKFTIPAETSKQR
LDLVKTLLEQLAQHRIGETH
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgaagaattttagcgttttaacaccgcctagtgtaaaaaaaggccaacaatttcagaca
ttagcaacactagggggcgtatctcaagccattaccctgtcgagtttaattcagcaacat
tctggcacaactctgattgtcacaagtgatacgccagcagcgctacaacttgaagttgaa
ctcggttacttattgtctcattacgacgtcaatgtctgcttgtttcctgacagagaaacc
ttgccttacgacagtttttcaccgcaccaagatttgatttctcaacggttagaaacctta
gcgcaaatgagccaaacacaacacaatgttattattgtgccagttaacacgctcatggtt
aaactgccgcctaaatcatttttaactgcaaatgtcatgttgctgaaaaaaggcgacact
tatagtctccaacaagtaagacaacatttaacagataccggttattacattgttgaccaa
gtatacgagcacggcgaatttgcgattcgtggttctattctagacatttttccgacgggg
tcagatcaaccattaagaattgagttatttgacgatgaagtcgagtcaattcgatacttt
gatgctgaaacccagcgttctcagcaagaaatagacgcagtaagaatgctgccagcaaaa
gagtttcctactgacagtgccggaatcgaaggctttaggcagcgttaccgtcgtcgattt
gaggtcatctcaaaagaagcagagtcggtttaccagctcgtgagtagaaaccttatgcct
gcgggtattgagaattacctaccactgttttttgatgaaacagccaatctgtttgattat
attcctgagaacactcagctcattacactgggtgatattgaacaagcaagtcagcaccat
ttaagtgaaatcaacagccgctatgaagaccgtagagttgatcctttacgccccttactc
gcgccacaagaactgtatctgctcatcgatgagttatttgcacaattcaaacgctatcag
cgctcgcaatttgctctacctagtgatgaaaatgacaaagcgcaacacgctagtgtgtct
gcgctgcctgatatcaatgccaatcacaaactcaagcagccattaatcagtctgcaagaa
tataatcaaacacatcaacaattggtgttctgtgctgaatcagaaggtcgacgtgaagca
ttaattgagttgctaggcaaaatcgatattaagcctaagttgttcaatcatttagatgac
tacatcaaggcaaaagatcctattgggttaattgtctcgccgctatcacgaggctgtgtt
attcacgatacgcctaaaggtgatatcagcgttatttgtgaaactgaattattcggacaa
cggatttctcagcaacgacgtagagaaaaacaaaagcaagtcagctctgatgtattagtc
aaaaatttagctgaattaaaagtcggtgaacctatcgttcaccttgaacacggtgttgcg
ctatatcaaggcttagtcacacttgatactggtggtttagtcgctgagtacttacagctt
gaatatactggcggcgataaattatatgttccagtatcttcactgcaccttattagtcgt
tacagcgtgggcgccgatgaaagcccaaccttaaataaactaggtaacgaaacgtgggct
aaagccaagaaaaaagccattgagaaaattcgtgatgttgccgctgaattactcgatgtt
tacgcccgaagacaggccagacctggcgatgcaatgaaaattgaagctgaagaatatgcc
caattttctcaaggttttccttttgaagaaactgtcgatcaagaaaccgcaatcgaagca
gtgcttgacgatatgcaagcgccaatagccatggatagactggtttgtggtgatgtcggt
tttggtaaaactgaagttgctatgcgagcagcttttgtcgcggtcaatgctggcaaacaa
gtggtagtattagtaccaaccaccctgcttgctcagcagcattatgaaaactttaaagat
cggtttgcagactggcctgtcgtcattgaagtcatgtcacgttttcgctctgtaaaagag
caaaatggggtgcttaaacaattgtctgaaggcaaagtcgatattgttattggtacccat
aaattactccaagctgaagccaactttgacaatttaggcttacttgtcattgatgaagag
catcgatttggtgtccgccaaaaagaaaaaattaaagcactacgggcaaatgttgatatc
ctgacattaacagcaaccccaatcccacgaaccttaaatatggcaatgtcggggatgcga
gatttatctattatcgcaactccaccagcaaaacgcttagctgtaaaaacctttgttcgt
gagtacgatattgcaacggtacgtgaagctatactgcgggaaatactgcgtggtggccaa
gtttacttcttgcacaataatgtcgaaaccattgaaaaatgtgcccaagacattcgcgaa
ttattacctgaatctcgcgtcgttaccgctcatggtcaaatgcgagaacgtgaacttgag
aaagtcatgtcagagttttaccaccaacgatttaacgtattagtatgtacaaccattatt
gagaccggtatcgatgtacctagcgccaacacaatcattatcgatcgtgctgataaattt
gggcttgcacaattgcaccaattacggggacgtgtgggtcgctcgcatcaccaagcttat
gcctatttaatgacgccacatccaaaattaatgagcgcagatgctcgtaaacgactcgcc
gcaattgatgccttagaagatttaggcgcaggctttatgttagccactcaagatttagag
attcgtggtgcgggcgagctcttaggtgacgagcaaagcggccatatttctaaaattggt
tttagtctatatatggaaatgctggaatcagcagttaaagcattaaaagaaggcaaagag
ccgtcgcttgcttacatgctaaattcacaatgtgagattgaattacgtattccagcccta
ctccctgatgactatgtctcagacgttaatatgcgtttatctttgtataaacgtattgcc
aattgcgaaactgaaaaaatgctagatgaactcaaagttgaattcattgatagatttggt
ctactgccagatcctactcgcaacttaatggaactaaccttatacaaacaccaagcaaca
gcgttaggcgccagtaagattgagatgcatgccaaaggtggtagcatagagtttaatgac
ggccataaaatagatcctatgttcatcattggtttattacaaagccagccacaaatttat
cgaatggaaggctcaaataagttaaagttcactatccctgctgaaaccagcaaacaacgt
ctagacttagtgaagacgttactagaacaattagctcaacaccgtattggagaaacccac
tag
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