Shewanella japonica: SJ2017_2605
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Entry
SJ2017_2605 CDS
T04959
Name
(GenBank) Nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
sja
Shewanella japonica
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sja03400
]
SJ2017_2605
DNA repair and recombination proteins [BR:
sja03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SJ2017_2605
Archaeal homologous recombinant proteins
SJ2017_2605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
AAA_23
AAA_29
SMC_N
nSTAND3
AAA_21
NTPase_1
AAA
Motif
Other DBs
NCBI-ProteinID:
ARD22894
LinkDB
All DBs
Position
complement(3093940..3097653)
Genome browser
AA seq
1237 aa
AA seq
DB search
MKILSLRFKNINSLKNEWKIDFTQSPFKENGLFAITGPTGSGKTTILDAICLALYHRTPR
LKVISKSTNELMTRGTSECLAEVEFEVKGKGYRAFWSQRRSRGQIDGNLQDAQVELAELD
SGKIIASQVKQKTELTEAITGLDFARFTKSMMLSQGQFAAFLNADANDRAELLEELTGTE
IYGQISEQVHVNFTQAKQALTLLEAKTDNVELLSDVDIAEKNEQLSEGELQSAKLQSLLN
QQQQQLNWAKQLEQNTAKLTESERELDVAQSELTAQAESLAKLEASEPAQMLAPLFESLT
KFEQQQNQLQTEQLTLSQAQQQSQLSLEAAKTEHLKRQEQFDSVKLQHTELLTLIEEQVQ
PLDNKIEQLNFQCDQQSKNKHQQTIQQQKITESQLELTQNLNQLNQSLSDNDKVIALYPQ
GQLIQSNIAAWQQQAINLSGLQLKKNELSQLISTLSQQDMLNQQQLVQQNEALASLIAEL
QTKQLALTHSEQQLTQCLGTSSEADLQAQYQNLIEQQVSRTRLQQLQVAHTDLVTQSHNA
TNENQHFAAQISAIAQELQQVRSAWSEKNQQVKDLQMLLKQEQQIVNLTQERAKLIQGEP
CALCGSKEHPLVEHYQALDVSDTEVRFEAKSAELELIKRQGEQLKLKQSKLQHQLELCAD
KQSMLHQQIQDCLIEYQQLAEQLSKPELIATKAEIDGALLTHFVEQSASRQQYLHQQLTD
IRELTQVKQSCAEQYQQTLTLLEQQQHQLQLFTQQQQNQQQQLTESKQQLSQIQQNITEL
ESSCQQQFSQAGLALNDFSQLETWLADLQTDVGQWAVAVEQQGKLTQQQQLLMQQAQTLT
QQQDELIQQISQLDELLQKTDLELTSVKQQRFAVFGDKQISQEKQLSQQALQQSELQFTQ
QAQVQSKLQQEFDKLAAQEQAVTQQLERTVNEVSEARNTFTLALSTSPFADQTEFEQALM
PVAQRQALQQLKQGLDTRILKASTVVEQTRAQQAELVKLGDESEYHQADIADVAIMHEQT
EARLSAMKEQVWQLKHLLSEDEKKRTTQQTLVAELTQAKQDFDDIAYLHSLIGSQKGDKF
RKFAQGLTLDHLVVLANRQLDRLQGRYLLERKQSEALELQVLDTWQGDAVRDTRTLSGGE
SFLVSLALALALSDLVSHKTSIDSLFLDEGFGTLDSQTLDTALDALDNLNASGKMIGVIS
HIEAMKERISVQIKVNKMNGLGVSRLQADYKFDSAET
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcctcagcctgagatttaaaaatataaactcattaaaaaatgaatggaaaata
gattttactcaatcgccatttaaagaaaatggactgtttgcgattacagggccgacaggt
tcgggtaaaaccacgattttagatgccatttgcttagcgttatatcatcgcacccccaga
ttaaaagtgatttcaaaatccacgaatgaattgatgacccgaggtaccagtgagtgttta
gcggaggttgagtttgaagtgaaagggaaaggttatcgcgccttttggagtcaacgccgc
tcacgtggtcaaattgatggcaatttacaagatgcacaggtggaattagctgaacttgat
tctggtaaaattatcgctagccaggtaaagcaaaagaccgagctaactgaagctataacc
ggattagattttgctcgctttaccaagtcgatgatgttatcgcaaggtcagtttgccgca
tttttaaatgcggatgctaatgatagggctgagttactcgaagagttaacgggaactgaa
atttatggtcagatttcagagcaagtgcatgttaattttacacaagcgaaacaagcctta
accttacttgaagccaaaactgataatgtagaactgttatctgatgtggatattgctgaa
aaaaacgaacagctaagcgaaggtgagctgcaatctgctaagttacaaagcctgttaaat
cagcaacagcagcaacttaattgggcaaaacagcttgaacaaaacaccgcaaaactgaca
gaaagtgaacgtgaactggacgttgcacaaagcgaattgaccgcccaagcagagtcactc
gctaaactagaagcaagtgagccggctcagatgcttgctccattatttgaaagcttaacc
aaattcgaacagcagcaaaatcaactgcaaacagagcaactgacactatcccaagcgcag
caacagtcgcaattatcccttgaagccgctaagacagaacatctaaaacgacaagagcag
tttgattcagtaaagctgcaacacactgagttgctcaccttgattgaggagcaagttcaa
ccgcttgataataaaattgagcaactgaattttcaatgtgatcaacagtcgaaaaataag
catcaacaaacaattcaacaacaaaaaatcacagagtctcagcttgagctaactcaaaac
ttaaatcagttaaaccagtcactttcagataatgacaaagtgattgccctgtatcctcaa
ggacaattaattcaaagcaatattgcagcttggcagcagcaagcaattaatttgtcagga
ttacagctgaaaaaaaatgaattatcgcagttaatttcaacgctatctcagcaagacatg
cttaaccaacagcagttggtgcagcaaaatgaggctttagcgtcacttatcgctgaatta
cagacaaagcagttagcattaacacatagtgagcagcaattaactcagtgtttaggtaca
agctcagaagcggatttacaagctcagtaccaaaatttgattgaacagcaagtctcccgt
actagattacagcagttacaagttgcacatactgacttagtgacgcaaagtcataacgcg
actaatgaaaatcagcattttgctgcgcagatctctgcgattgctcaagaattacagcaa
gtacgtagtgcttggagtgaaaaaaatcagcaagttaaagatttacaaatgctgcttaaa
caagagcagcaaatcgttaatttaacccaagagcgagctaaactcattcaaggtgagcct
tgtgccctgtgtggttccaaagagcaccctttagttgagcattaccaagcgcttgatgtt
tctgataccgaggtacgctttgaagccaagtccgcagaacttgaattaattaagcgtcaa
ggtgagcaattaaagctgaagcaaagtaagttacagcatcaacttgaactgtgcgcagat
aaacaatcgatgttgcatcagcagattcaagattgtttgattgagtaccagcaattagct
gagcaattatctaagccagaactgatcgccacaaaagctgaaattgatggcgcactattg
actcattttgttgaacaatcggctagtcgccaacagtatttgcatcagcaattaactgat
attcgagaacttactcaggttaaacaatcctgtgctgagcaataccagcaaacactgact
ttactagagcagcagcaacatcaattacaactttttactcagcagcagcaaaatcagcaa
cagcaattaactgagtcaaagcagcagcttagccaaatacagcaaaacattactgagctc
gaatctagctgtcagcaacaattttctcaagctggattagctttaaatgacttttcacaa
ctggaaacctggttagcagatttacaaaccgatgtcggtcaatgggctgtggcagttgag
cagcaaggaaaattaactcagcagcaacagttattaatgcagcaagctcaaacactcact
cagcagcaggatgagttaattcagcaaatatcacaactcgatgagttattgcagaaaacg
gatcttgagttaacgagtgtaaagcagcaacgattcgctgtttttggcgataaacaaatc
agtcaagaaaagcagcttagtcagcaagcgttgcagcaatcagagttgcaattcactcag
caggctcaagtgcaaagcaaactacagcaagagttcgataaactcgctgcacaagagcag
gccgtcacacagcagctagaacgcacagtcaatgaagtatccgaagctagaaacactttt
accttggctttatcaaccagtccatttgctgatcaaactgaatttgaacaagcgttgatg
cctgtagcgcaaagacaagcactacagcaacttaagcaagggctagatactcgtattttg
aaagctagtacggttgttgagcaaacaagggctcaacaggctgagttagttaagttgggt
gatgaatctgaatatcatcaggcagatattgctgatgttgccatcatgcatgagcaaaca
gaagcccgtctttcagccatgaaagagcaggtttggcagttaaaacacttattaagtgaa
gatgagaaaaagcgcaccactcaacaaaccttggtggctgagcttactcaagctaaacag
gactttgatgatatagcttatttacactcattgattggatcgcaaaagggtgacaaattc
cgtaagtttgctcagggactcactcttgatcaccttgtggtgttggcgaatcgacaatta
gataggctacaaggtcgttatttattagaaagaaaacaatcagaagcactcgagttacag
gtactggatacttggcagggtgatgctgtgcgtgatacgcgtactttatctggcggtgaa
agctttcttgtaagtcttgcacttgcgttggcattatcggatttagtcagccataaaacc
agcattgactcgttatttttagatgaaggttttggtacgcttgatagtcaaacactagat
actgccctagatgcgctcgataacctgaatgcttctggcaaaatgattggggttatcagt
catattgaggcgatgaaagagcggataagtgtgcaaattaaagtaaataagatgaatggc
cttggggtgagtcgattacaggctgactataaattcgattcagctgagacataa
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