Shewanella japonica: SJ2017_2642
Help
Entry
SJ2017_2642 CDS
T04959
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sja
Shewanella japonica
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sja03019
]
SJ2017_2642
Enzymes [BR:
sja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SJ2017_2642
Messenger RNA biogenesis [BR:
sja03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SJ2017_2642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
T2SSE
PhoH
nSTAND3
NACHT
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
ARD22930
LinkDB
All DBs
Position
complement(3145872..3149747)
Genome browser
AA seq
1291 aa
AA seq
DB search
MNSDQHPLSKAYLNSCYQTDAARIRRRLYQLNKEPQSEKKVQVLAKLAEQATQAYEKAQL
RLKNSPKVTYPDALPVSQKRDDIASAIVNNQVVIVAGETGSGKTTQLPKICLELGLGTRG
LIGHTQPRRLAARSVANRVAEEINSPLGEVVGFKVRFADAISPDSYVKLMTDGILLAELT
SDKFLNQYDAIIIDEAHERSLNIDFILGYLKQVLKKRPDLKVIITSATIDVERFSKHFNN
APVIEVSGRTFPVETRYRPLVRDTDADLDVSDGIFSAVDELMAEGPGDILIFMNGEREIR
DTAEMLRKQKYRDTEVLPLYARLSYGEQSKVFKSHIGRRIVLATNVAETSLTVPGIRYVI
DPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYDETDFIQRPEFT
DPEILRTNLASVILQMLAIGLGDIAGFPFIQPPEQKHIRDGFLLLEELQAVKQKRKELVL
TNLGRNLAKIPLDPRLARMVLEAKDMSCLHEVMVIASGLSIQDPRERPIEKKQAADECHR
RYADKDSDFVSWVNLWNYLKDQKSELSASQFRKQCREEYLAYLRVREWQDLYTQIKQAVH
DLKWRLNDTPASYDNLHKALLSGLLSHIGFKDANNEYLGARNRKFFVFPGSPLAKKGPKW
IMAAELTETSRLFARCCAKIQPEWLEPLAAHLIKKNHLEPHFEAKPASVIAFENQVLYGL
TVVNRRRVQYGPIDPVEAREIFIRSALAEGQLHTKEPFFIKNQQLLNDIESLEHKSRRRD
ILVDEQVLVDFYDPLIPQGIYNASLFFKWWKQARKETPELLDFNQDLLMQRSADHISALD
FPEVWQKANLGLQVSYHFEPAAVDDGVSVHIPVALINQVDTEDFDWLVPGLREEKVVALI
KSLPKNLRRNFVPAPDYARACVQAMEPFSMPLLDAMCKQLLRMTGTRISGDDFDLTQLSA
HLTINFKIEDDKHRLVDQGRDLDSLKDKLQGVVAKAIRNVAEEGIEKKDITTWSFGDLPK
QYQKRKGNYEVKAYPALIDEKDQVSIKLFDDEFEAERQHRAGLRRLLLINIPSPVKHLQK
ALPNKAKLAMYFNPFGQVQLLIDDIISASVQQLLDEKKLDVRNEAQFEQAKDWVRQELND
YAEQISLQVEQILTIYQRIKKRLKGKISLDIAFAMSDINTQLDKLVFKGFVEHCGWSRLT
DVARYLKAIENRLDKLPVDPTRDRLHMQSISKVQDLLNAQLAKVPKTQPVPEVLVEARWM
IEEFRVSCFAQVLGTAYPISEKRIVVQISQV
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
ttgaattcggaccaacacccgctctctaaagcatacctaaactcttgttatcaaaccgat
gcggcaagaattcgtcgtcgtttgtatcaattaaacaaagagccgcagtctgaaaagaaa
gttcaagtcttagccaagttagctgaacaagccactcaagcctatgaaaaggctcaacta
aggctaaaaaatagccctaaagtgacttatccagatgccttacctgtctctcaaaaacgc
gatgacatagcctcagcgattgtgaataaccaggtcgtcattgttgcgggtgaaacagga
tctggtaaaacaacccagctacccaagatatgtttagagctaggccttggtacacgtggt
ttaattggccacactcaaccaaggcgtcttgcagcaagaagcgttgctaatcgcgttgct
gaagaaattaacagcccgctaggcgaggttgttggttttaaagtgcgttttgcagatgcc
ataagtccagacagttacgttaaattaatgactgatggtattttactggcagaattaacc
tctgataaatttttaaatcaatacgatgccatcattattgatgaggcgcatgagcgtagt
ttaaacattgatttcatcttaggttacctcaagcaggtgctgaaaaagcgacctgattta
aaagtgatcattacttcggcaaccattgatgttgagcgattctctaagcattttaataat
gcgccagttattgaagtatcgggtcgaaccttccctgtagaaacgcgttatcgaccatta
gtccgtgataccgatgctgacttagatgtgagtgatggtattttctccgctgttgatgag
ctaatggctgaagggcctggcgatattttgattttcatgaatggcgaacgtgaaattcgt
gataccgcagaaatgcttcgcaagcaaaagtaccgtgatacagaagtgctgcctttgtac
gcgcgtctatcatatggcgaacaatctaaagtcttcaaaagtcatatcggtcgtcgcatt
gtgttagcaaccaatgtggccgagacgtcattaactgtacctgggatccgctatgtgatt
gacccaggtaccgctcgaattagccgttatagttaccgtactaaagtacaacgtttgccg
attgaacctatttctcaagccagcgcaaatcagcgtcaaggtcgctgtggacgtgtcggt
ccaggtatttgtattcgtttatatgatgaaactgattttattcagcgtcctgagtttacc
gatcctgaaatcttacgtaccaatcttgcctcggttattttgcagatgttagccattggg
ctaggcgatattgcgggtttcccatttatacagcctcctgagcaaaaacatattcgcgat
ggcttcttactgctagaagagctgcaagccgttaaacaaaaacgcaaagagttagtgctg
accaaccttgggcgtaacttagcaaaaatcccactcgatcctcgtcttgctcgtatggta
cttgaagcgaaagatatgagttgtttgcatgaagtcatggttattgcttcaggtttatct
attcaagatcctcgtgaaagaccgattgaaaaaaaacaagctgcagatgagtgccatcgt
cgctatgccgataaagactctgattttgttagctgggttaatttatggaattacttaaaa
gatcaaaaaagcgaattgtcagcaagccagttcagaaagcaatgtcgtgaagaatactta
gcgtatttgcgtgtacgtgagtggcaagatttatatacccagattaaacaagcggtacac
gatttaaaatggcgtttaaatgacacaccagccagttacgataatttacataaagcgttg
ttatcaggcttgttaagccacattggttttaaagatgcgaataatgaatatcttggtgcc
cgcaaccgtaagttttttgtatttcctggctcgcctttagcaaaaaaaggcccgaaatgg
ataatggcggctgagctcactgaaacttctcgtttatttgccagatgctgcgccaaaatt
caaccagagtggttagagcctttagctgcacatttgattaagaaaaatcatctagagcca
cattttgaagcgaaacctgccagtgtcatcgcatttgaaaatcaagtgctatatggccta
acagtggttaatcgccgtagagtgcaatatgggcctattgatcctgttgaagctcgtgaa
atctttattcgcagcgcgttagctgaagggcagttacacacaaaagagcctttctttatt
aaaaatcagcaactgctgaatgatattgaatcgttagaacataaatctcgacgccgtgat
attttagtggatgagcaggtgctggtggacttttatgatccgcttattccgcaaggtatt
tataatgcgtcactattctttaaatggtggaaacaggcacgtaaagaaacgccagagcta
ctggactttaatcaagacttattgatgcagcgaagtgcagatcatatttcagcgttagat
ttccctgaagtatggcaaaaagctaacttgggtttacaagtgagttatcactttgagcct
gccgctgttgatgatggggtgtcggtgcacattcctgtggcgttgataaaccaagttgat
actgaagattttgattggttagtaccaggacttcgtgaagaaaaagtcgtggcgctgatt
aagtcgttgcctaaaaatcttcgccgtaattttgtgccagcgccagattatgcccgcgcc
tgtgtacaagctatggagcctttttcaatgccgctgcttgatgcaatgtgtaagcagtta
cttcgcatgacaggtacacgtataagtggtgatgattttgacttaactcagttaagtgct
catttaacaattaactttaaaattgaagatgataagcaccgcctagtggatcaggggcgt
gatttagattctttaaaagataagttgcaaggtgtggtggcaaaagccattcgtaatgtg
gcggaagagggaattgaaaagaaagacatcacaacatggtcatttggggatttaccaaag
caatatcaaaaacgtaaaggtaattacgaagttaaagcttatccagcgttaattgatgag
aaagatcaagtctctattaaattgtttgatgatgaatttgaggccgagcgtcagcaccga
gcaggtttacgtcgtttattgctcattaatattccttcgcctgttaaacatcttcaaaaa
gccctgccaaataaagcaaaattggcgatgtactttaacccatttggtcaagttcaatta
ttaattgacgatattatttctgcatcagttcaacaactgttggatgagaaaaagctagat
gtgcgtaatgaggcgcaatttgagcaagctaaagattgggtgaggcaggagttaaatgat
tatgctgagcaaatctcgttgcaagttgagcaaattctgacgatatatcaacgtattaaa
aagcgcttaaagggtaaaatcagtttagatattgcttttgcgatgagtgatataaatacc
cagttagataaattggtgtttaaaggttttgttgagcactgtggctggagtcgccttact
gatgtggcgaggtatttaaaagcgattgaaaaccgtttggataaattaccggttgatccg
actcgtgatcggcttcatatgcagagtattagtaaagtacaagacttgttaaatgcgcaa
ttagccaaagtgcctaaaactcagcctgtacctgaagtattagttgaagcacgttggatg
atcgaagaattccgtgtttcatgttttgcgcaagtcttaggaacagcgtatcccatttct
gaaaaacgcattgtagtacaaatcagtcaagtgtaa
DBGET
integrated database retrieval system
