Shewanella japonica: SJ2017_2811
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Entry
SJ2017_2811 CDS
T04959
Name
(GenBank) DNA-3-methyladenine glycosylase 2
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
sja
Shewanella japonica
Pathway
sja03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SJ2017_2811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sja03000
]
SJ2017_2811
03400 DNA repair and recombination proteins [BR:
sja03400
]
SJ2017_2811
Enzymes [BR:
sja01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
SJ2017_2811
Transcription factors [BR:
sja03000
]
Prokaryotic type
Helix-turn-helix
AraC family
SJ2017_2811
DNA repair and recombination proteins [BR:
sja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SJ2017_2811
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ada_Zn_binding
AlkA_N
HTH_18
HTH_AraC
HhH-GPD
SWIRM
DUF6233
HTH_3
Motif
Other DBs
NCBI-ProteinID:
ARD23092
LinkDB
All DBs
Position
complement(3322757..3324391)
Genome browser
AA seq
544 aa
AA seq
DB search
MGKVTLSPSLTYRYMMTSTHNQPHPDNELEPVLEPSIACYLPNDVCRQARLSRDARFDGR
FFIGVKTTGIYCRSICPASPPKEQNVVYFDSAIKASQAGLRPCLRCRPDSAPESNAWQGS
STSLQRAISLIEGGSLSGENAQSLTELSARLGISSRYLSRLFNQQLGTSPKKYALYRQLM
FAKQLLHQTSLSITDVAMAAGFNSIRRFNEVFKSQLLLTPTQLRKTQKVNKSAETNSQGI
KLLLDYRPPYSWQDIWSFYQLRAVDGMEWLNETTYAYGRSFAFSFNEQTVTGVYEVVPVK
GKNQLALTVEFEQTEHIRYLHQTVRFIRQRLDLDADMDVIEQSFEPLQNLGMKVKQGLRI
PGTASVFEAGCRAVLGQQVSVIQASKLLNILVKNYGAVKRVGGRDVQFFPSAESIAAASL
DEFKMPESRKRALNGLGDFVAKNPFACPSKWIDIKGIGPWTIAYAQMRGESNPDVFLGGD
LVIKNRIKALLLALSDLPDNNPFAIANKAEFTPRLYQTFVNNLAKQVSPWGSYLTFQLWS
QNEN
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
ttgggtaaagtgacgttatctccatcactgacttatcgatatatgatgactagtacacac
aaccagccacatccagataacgagctcgaaccggtgctagaaccttcaattgcatgttat
ttgccgaatgatgtttgcagacaggcgaggttaagtcgtgacgcacgctttgatggtcgc
tttttcattggcgtaaaaacgacaggaatttattgccgttcgatttgtcctgcttctcct
cctaaagagcaaaatgtggtgtatttcgattcggcgataaaggcttctcaagctgggctg
aggccttgtttacgctgccgacctgacagtgctccagaatctaatgcatggcagggttca
agcactagtttgcagcgagctatttcgttaatcgaaggtggcagcctttctggtgagaat
gcgcagtctttaacggaattatcagcaagattagggataagctcccgttatttgtcacgt
ttatttaatcaacaactcgggacttcacctaaaaaatatgccttatacaggcaattgatg
tttgcgaaacaattactacatcaaaccagtttatcgataacggacgtcgcaatggcggca
ggtttcaatagcataagacgctttaatgaggtgtttaaatcacaactactactgacgcca
acacagctgcgcaaaacccaaaaagtaaacaagtctgcagaaaccaactcgcaaggtatt
aagttattgttggattatcggccaccgtattcatggcaggatatttggtcgttttatcaa
ttgcgtgcagtagatggtatggagtggctgaatgaaacaacttatgcttatgggagaagt
tttgctttttcattcaatgagcaaacagtgacaggtgtctatgaagttgttcctgtcaaa
ggcaagaatcaattagcgttaacagttgaatttgaacagactgaacatatccggtattta
catcaaaccgtgcgatttatcaggcagcgactagatttagacgcggatatggacgtgatt
gaacaatcatttgagccgctgcagaacttagggatgaaggtgaaacaaggcttgagaatt
ccaggtactgcttcagtatttgaggcggggtgtcgcgcagtacttggccagcaagttagt
gtgattcaagccagtaaacttctcaatatactcgttaaaaattatggtgccgttaagcga
gttggaggtagggatgtgcagttttttcctagcgctgagtccatcgctgcagcgagttta
gatgaatttaaaatgcctgaatctcgaaaacgtgcgctaaatggccttggtgactttgtt
gctaaaaatccatttgcttgccctagtaaatggatagatataaaaggcataggtccttgg
actattgcttatgctcaaatgcgaggagagagtaaccctgatgtgtttttgggcggagac
ttagtgattaaaaatcgaattaaagccctcttgcttgccttaagtgacttgcctgataac
aacccgtttgcgatagcaaataaggctgagtttacccctaggttgtatcaaacattcgtt
aataacctcgctaagcaagttagcccatggggcagttatctcacgtttcaattgtggagc
caaaatgaaaattaa
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