Shewanella japonica: SJ2017_3099
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Entry
SJ2017_3099 CDS
T04959
Name
(GenBank) RNA polymerase sigma factor RpoS
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
sja
Shewanella japonica
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sja03021
]
SJ2017_3099
Transcription machinery [BR:
sja03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SJ2017_3099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_Crp_2
Fe_dep_repress
MarR_2
HTH_11
Motif
Other DBs
NCBI-ProteinID:
ARD23368
LinkDB
All DBs
Position
complement(3670284..3671264)
Genome browser
AA seq
326 aa
AA seq
DB search
MSQKQNAAVAEELMDLAKQPEEVALKAGTKAKTAQQPDIDQQVQDDLQKNLDATQLYLGE
IGFSPLLSAEEEVFFSRKALKGCEKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGN
LGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARQ
LAQKLDHEPTAEEIADTLDVSTSDVSRMLKLNEKITSVDTPLGGENDKALLDVIADDDSV
GPDYKVQDEDLSNSIVGWLNELNTKQREVLARRFGLLGYEPSTLENVGAEIGLTRERVRQ
IQVEALKRLKDVLGAQGLSVEALFRS
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgagccagaaacaaaacgctgcagtagcagaagagcttatggatttagctaaacaacca
gaagaggttgcactaaaggcaggaactaaagccaaaacagcacagcaacccgatatcgac
caacaagttcaagatgatctgcaaaagaatcttgacgccactcaactatatttaggtgag
attggtttttcccctttgcttagtgcagaagaagaagtcttcttttcacgtaaagcactc
aaaggctgcgagaaatctcgtaaccgcatgatagaaagtaacttacgtttagttgttaaa
attgccagaaggtataacaaccgtggactagcgttacttgatcttattgaagaaggtaac
ctaggacttattcgcgcggtcgaaaaatttgacccagagcgaggctttcgtttttcaact
tatgcgacatggtggataagacagaccattgagcgcgctatcatgaatcaaactcgcacc
attcgtttacctattcatgtcgttaaagagcttaacgtgtaccttcgtaccgcaagacaa
ttggctcaaaaattagatcatgagcccacggctgaagaaatcgcagatacgttagatgtt
tctactagcgatgtaagccgcatgttaaagctaaacgaaaaaatcacttctgtagatacg
ccattaggcggcgaaaatgataaagccttattagatgtcattgctgatgatgattcggtt
ggacctgattacaaagtgcaggatgaagatctatcaaattcgatagtaggttggctaaat
gagctaaatactaagcaaagagaagtgctcgcgagacgttttggtttattaggttatgag
ccttctacattagaaaatgtgggtgctgagattggcctaacgcgtgaacgtgtccgccag
atccaagttgaagctttaaaacgattgaaagatgttttaggtgcacaaggcttgtcagtt
gaagcgttattcagaagctaa
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