Shewanella japonica: SJ2017_3103
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Entry
SJ2017_3103 CDS
T04959
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
sja
Shewanella japonica
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sja03016
]
SJ2017_3103
Enzymes [BR:
sja01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
SJ2017_3103
Transfer RNA biogenesis [BR:
sja03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SJ2017_3103
Prokaryotic type
SJ2017_3103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
ARD23372
LinkDB
All DBs
Position
complement(3673648..3674808)
Genome browser
AA seq
386 aa
AA seq
DB search
MSSLHYLFGKPACKADLRTVNSDFIVKEMLPFSPTGEGEHHMIHVRKEGLNTNQVAEILA
KFAKVHQKEVTYAGQKDKNAVTEQWFGVRIPGKETPDWQSLSTQDNTDAKANEVDLANKE
NTPRLTILSSQRHSKKLRIGALLGNRFELTLRNVSDKAELEKRIQQVMQTGVPNYFGEQR
FGHQGKNLIFGQQMLAGKKVKDRKKRSMYLSAVRSNVFNQVVSYRLNHHSIAPLTGDCVM
LAGSKSFFVTDKWDPETLARLSSNDIQLSAPLWGRGSILPQADAANVEQAALIALTNDLQ
GLEQAGLEQERRPMLLKPQALKYRFEQDTLLIEFILPAGSYATSVLRELLDYQDVQEVAR
QQRVAEQQMQASMQAENLQKAQESTK
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgttacattacctttttggtaagcctgcatgtaaagctgatttacgtactgta
aacagtgattttatcgttaaagaaatgctccctttcagtccaacaggtgaaggtgagcat
catatgatccatgtgcgtaaagagggcttgaataccaatcaggtggctgaaatcttggct
aaattcgctaaagttcatcaaaaagaagtgacgtacgcgggccaaaaagataaaaacgcc
gttactgagcaatggttcggcgtcagaattccgggaaaagaaacccctgactggcagtct
ctttcaacacaagataatactgatgcaaaggcgaatgaagttgacttagcgaataaagaa
aatacccctcgcttaaccatattatctagtcagcgccatagtaaaaaattgcgtattggg
gcattacttggaaatcgttttgaactcaccctgcgcaatgtcagtgacaaggctgagctt
gagaaacgtattcaacaggtaatgcaaactggtgtccctaattattttggggaacagcgc
tttggtcatcaaggtaagaatttgatttttggccagcaaatgctagctggaaaaaaagta
aaagatcgaaaaaagcgcagtatgtatctttcggcagttcgctctaatgtgtttaatcaa
gtggtgtcttatcgattaaaccatcatagtattgcgcctctgacaggagattgcgtcatg
cttgcggggagtaaaagtttttttgtgacagataaatgggatcctgaaacattagcaaga
ttatcaagtaatgatattcagttatcggcgccgttatggggaagaggtagcatactccct
caagctgatgctgctaatgttgagcaagctgcgttaatagcactaacaaacgatctacaa
gggttagagcaagctgggttagagcaagaaagacggcctatgctgttaaaaccgcaagca
ttgaaatatcgttttgaacaagacaccttgctcatagagttcatattacctgcaggtagc
tatgcaacttccgttttgcgagagttattggattatcaagatgtgcaggaagttgcacgt
cagcaaagggttgctgaacagcaaatgcaagcttcaatgcaagcagaaaacctacaaaaa
gcgcaagagtcgacaaagtga
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