Shewanella japonica: SJ2017_3111
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Entry
SJ2017_3111 CDS
T04959
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sja
Shewanella japonica
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sja03009
]
SJ2017_3111
Enzymes [BR:
sja01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
SJ2017_3111
Ribosome biogenesis [BR:
sja03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SJ2017_3111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
MTS
Methyltransf_11
TRM5-TYW2_MTfase
PCMT
RrnaAD
Methyltransf_4
Methyltransf_23
Methyltransf_12
Methyltransf_15
Methyltr_RsmB-F
TehB
PrmA
Cons_hypoth95
Ubie_methyltran
UPF0020
DUF3818
DAB2_SBM
Motif
Other DBs
NCBI-ProteinID:
ARD23380
LinkDB
All DBs
Position
complement(3683847..3685220)
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AA seq
457 aa
AA seq
DB search
MAQFFKAKPNKTKQLSAKLSLTVTQLDHLGAGIAQHNGKVVFIPGALPGEKVTVQLTEQK
KKYAKAKLIGIDEKTPNRAKAKCPHYQQCGGCDLQHLSIDAQRQHKQAALTNLMSKLAVD
VEDGILTEPVVSEDWHYRRRARLATLFNKKSKMLELGFRAANSNNIVQIKQCDVLAKSLS
NLITPFTALLNQLHAKTTLGHVELTEAENGVFAVLRITKALKESDSQLLIEFAKAQKIHL
LTQDNEGQLQSLFVADEPPADVITENHIRLPFYRLAEGQVQCQFSPGNFVQVNADINQKM
VAQAIEWLAPKENERILDLFCGVGNFSLPLALQAADVVGVEGVPEMVAQANQNAKENQLN
NIHFYHADLSADLSEASWLGQIDKLLLDPARAGAYESLQWLSKMKPAKVVYVSCNPASLA
RDSQVLIEQGYQLSKLTMLDMFPQTHHIEAMALFETR
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattttttaaagcaaaaccgaacaaaacgaagcagttatcagctaagttgagt
ttaacggtaacacaacttgatcaccttggcgctggtatagcacagcataatggtaaggtc
gtgtttatacctggtgcgctccctggtgaaaaagtgacggtacagctaacagaacaaaag
aaaaaatacgctaaagcgaaattaatcggtatagacgaaaaaacaccaaatcgtgccaaa
gcaaaatgtccacattatcaacagtgtggcggttgtgatttacaacacttaagcatagat
gcacaacgtcaacataaacaagctgccttaactaatttaatgagcaaactggcagtagat
gtcgaagacggtattcttactgagcctgtcgtcagtgaagattggcattatcgccgaaga
gcaaggctagctacgctgtttaataagaaatcaaaaatgctcgaattaggcttccgtgct
gccaatagcaataatattgtgcaaataaaacaatgtgatgtattagcgaagtcattatca
aatttaattacaccgtttaccgcattacttaatcaacttcatgctaagacaacgttaggg
catgtggagttaactgaagcagaaaatggcgtgtttgcggtattacgcatcactaaagct
ttgaaagaaagtgatagtcagttactcatcgagtttgccaaagcgcaaaagattcatttg
ctaactcaagataatgaaggtcaattacagtctctgtttgtggcagatgagcctccagcc
gatgtcattactgagaatcatattagattacctttttatcggttagctgaaggccaagtt
cagtgccagttcagtcctggtaattttgtgcaagtgaatgcggatattaatcaaaagatg
gttgctcaagctattgagtggttagcacctaaagaaaatgaacgaattttagatttgttt
tgtggggtaggtaattttagtttgccattggcgttacaagccgcagatgtagttggggtt
gaaggcgtgcctgaaatggtggctcaagccaatcaaaatgcgaaagaaaaccaattaaac
aatattcatttttaccatgccgatttaagtgctgatttatctgaggcaagctggttagga
caaattgataaattacttctcgatccggctcgtgccggtgcatatgaaagtttgcaatgg
ttatctaaaatgaaacctgcaaaagtggtctatgtatcctgtaacccagcgagtttagcg
cgcgatagtcaggtgttaattgagcaaggttatcaattgagtaaattgactatgttagat
atgtttccacaaacgcatcatattgaagcgatggcattatttgaaactcgctaa
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