Shewanella japonica: SJ2017_3163
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Entry
SJ2017_3163 CDS
T04959
Name
(GenBank) NusA antitermination factor
KO
K02600
transcription termination/antitermination protein NusA
Organism
sja
Shewanella japonica
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sja03021
]
SJ2017_3163
03009 Ribosome biogenesis [BR:
sja03009
]
SJ2017_3163
Transcription machinery [BR:
sja03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
SJ2017_3163
Ribosome biogenesis [BR:
sja03009
]
Prokaryotic type
rRNA transcription factors
SJ2017_3163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NusA_N
KH_5
HHH_5
S1
KH_NusA_C
DUF4332
DUF2187
Glyoxalase_4
KH_KhpA-B
KH_2
Motif
Other DBs
NCBI-ProteinID:
ARD23431
LinkDB
All DBs
Position
complement(3751767..3753266)
Genome browser
AA seq
499 aa
AA seq
DB search
MNKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYEGEIEVRVAIDRKTGHYDTFR
RWMVVDDQGEALENPYSEITLEAARFENPEIQPGEFIEDEIDSVVFDRITTQTAKQVIVQ
KVREAERAQIVEQFIEREGEIVTGVVKKSTRESVVVDLGNNADGVIYKEDIISRESFRPG
DRVRALLYAVRPEARGAQLFLTRSKPEMIIELFRVEVPEILDEMIEIMGAARDPGARAKI
AVKTNDKRIDPIGACVGMRGARVQAVSNELSGERVDIVMWDDNPAQYVINAMAPADVASI
IVDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVEELNAKHQAESAKVI
SLFVETLDVDEDFATVLAEEGFTSLEEIAYVPEAELLEVDGFDEDIVAALRERAKAAIST
RALATEEALDGAEPAADLLALDGLEKHLAYVLASKGVSTLEDLAEQGIDDLIDIEELTEE
KAGELIMAARNICWFGEEA
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagagattctgctagtcgcagaggcggtatccaatgaaaaagccgtcccacgc
gagaaaatattcgaagcgctagaaattgctctagccacagcaactaagaaaaaatacgaa
ggcgaaattgaagttcgcgttgctattgaccgtaaaacgggccactacgacactttccgt
cgttggatggttgttgatgatcaaggcgaagctttagaaaacccttatagtgaaattaca
cttgaagctgcacgttttgaaaatcctgaaattcaaccgggtgagttcatcgaagatgaa
atcgattcagttgtttttgaccgtattacaacgcaaacagcgaagcaagttattgtacaa
aaagtacgtgaagctgaacgcgcacaaatcgtagagcagttcatcgaaagagaaggtgaa
attgttactggtgttgtcaagaaaagcacccgcgaaagtgtagtcgttgatttaggtaat
aacgcagacggtgtgatttataaagaagacatcatcagtcgtgaatctttccgcccaggt
gaccgtgttcgtgcattactttatgccgttcgcccagaagctcgtggcgcgcaactattt
ttaacccgtagtaagcctgagatgatcatcgagctattcagagtagaagtacctgaaatt
ttagatgaaatgattgaaatcatgggcgcagcacgtgatccaggcgctcgcgctaagatt
gcagtgaaaactaacgataagcgtatcgacccaatcggtgcttgtgttggtatgcgtggt
gcacgtgttcaagctgtatcaaatgaattaagcggtgagcgtgttgatatcgttatgtgg
gatgacaatcctgcacaatacgtgatcaatgcaatggcaccagctgatgttgcttcaatc
attgttgatgaagacaaccactcaatggatattgctgttgaagcagatagtttggcacaa
gcaattggccgtaacggtcaaaatgttcgtttagctactcaactaacaggttgggaactt
aacgtgatgaccgttgaggagctaaacgctaagcatcaagctgaaagcgctaaagtgatt
agcttgtttgttgaaacattagacgttgacgaagattttgcaaccgttcttgctgaagaa
ggtttcacttctttagaagaaattgcatacgtaccagaagcagaactgttagaagttgac
ggttttgatgaagatattgttgctgccttgcgcgaacgtgccaaagcagcgatttcgact
cgagcattagcaacggaagaagcacttgatggtgcagaaccggctgctgatttattagcg
ttagatggtttagaaaagcatttagcatatgttcttgcaagtaaaggtgtgtcgacctta
gaagacttagcagaacaaggtattgacgatttaatcgatattgaagaattgacagaagaa
aaagcaggtgagctcatcatggctgcccgtaatatctgttggtttggcgaagaagcataa
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