Shewanella japonica: SJ2017_3459
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Entry
SJ2017_3459 CDS
T04959
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sja
Shewanella japonica
Pathway
sja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SJ2017_3459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sja03019
]
SJ2017_3459
Enzymes [BR:
sja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SJ2017_3459
Messenger RNA biogenesis [BR:
sja03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SJ2017_3459
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
P-loop_SecA
AAA_22
DUF2529
HI1480
Motif
Other DBs
NCBI-ProteinID:
ARD23710
LinkDB
All DBs
Position
4094802..4096238
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AA seq
478 aa
AA seq
DB search
MSFASLGLSTAILKAVEKQGYDTPSAIQEQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL
ELLSKGQRAKRGQVRALVLTPTRELAAQVAESVSTYGTNLPLKSAVVFGGVSINPQISTL
RNGVDILVATPGRLLDLCQQKALSFSQLEVLILDEADRMLDMGFIRDIKKVLAMLPKQRQ
NLMFSATFSDEIRELAKGLVNNPVEISVTPRNATANTVEQCVYAVDKSRKARILTKLIKE
NDWHQVLVFSRTKHGANRLAKNLDAEGINAVAIHGNKSQGARTKALADFKAGKAQVMVAT
DIAARGIDIDQLPFVVNFDLPNVPEDYVHRIGRTGRAGATGLAVSLVSDEEVKLLHDIER
LIKRTVERKLIEGYEACHDLPEASLKGGHRTANHKKPNPNRRKHANQADKPKQGQKQGQR
PAPKGNTDKPSQRQRARARAEAETAQAEGTKKPQRRRQGRNDQTATQGKVDPYANARR
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgcctcactaggcttaagtacagcaattttaaaagctgttgaaaaacaaggt
tacgacactccatctgcaattcaagagcaagctattccagccgtattagaaggcaaagat
gtcatggctgctgcgcaaacggggacaggtaaaaccgctggatttaccttacctttgtta
gaattactctctaaaggccaacgagcaaagcgcggccaagttcgtgctttagtgcttact
ccaacacgcgaactggcagcccaagttgctgaaagcgtctcaacatatggcactaactta
ccgctaaaatcggccgtggtgtttggtggcgtatccattaaccctcaaatctcaacacta
agaaacggtgttgatattttagtagccaccccaggtcgtttattggatttatgccaacaa
aaagcgttgagctttagccaacttgaagtactgattttagatgaagctgaccgcatgcta
gacatgggctttatccgagacattaaaaaagtattggccatgttgccaaagcaacgtcaa
aacttaatgttctcagcaaccttttctgatgaaattcgtgaacttgctaaaggcttagtt
aacaacccagttgaaatctcagtgaccccacgcaacgccacagccaacacggttgaacaa
tgtgtttacgcagtcgataaaagccgtaaagctcgtattctaactaagctaattaaagaa
aatgattggcatcaagtgttagtgttttcacgtacgaaacacggcgctaaccgtttagct
aaaaacctcgatgccgaaggtattaatgccgttgctattcacggtaacaaaagccaaggc
gcgagaacaaaagccctagccgattttaaagcaggcaaagcacaagtcatggttgcaact
gatattgcagcacgtggtatcgatatcgatcaattgccatttgtggtgaactttgatttg
ccgaatgtaccagaggattacgttcatcgtatcggtcgtacaggtcgtgcgggtgcaaca
ggcttagctgtatcacttgtgagtgacgaagaggtgaagttactccatgacattgaaagg
ctcatcaagcgtactgttgaacgtaagctcattgaaggttacgaagcttgtcacgattta
cctgaagcaagtttaaaaggcggacatcgcacagcgaatcataagaagccaaacccaaat
cgccgtaagcatgccaaccaagctgacaaaccaaagcaagggcaaaaacaaggacaacgt
cctgcgccaaaaggcaatacagataagccaagtcagcgccaacgcgcccgtgctcgagct
gaagctgaaacagctcaagctgaaggcactaaaaagccacaaagaagacgccaaggtcgt
aatgaccaaacggcaactcaaggcaaagtcgacccttacgcgaatgctaggcgctag
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