Shewanella japonica: SJ2017_3463
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Entry
SJ2017_3463 CDS
T04959
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
sja
Shewanella japonica
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sja03009
]
SJ2017_3463
Enzymes [BR:
sja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SJ2017_3463
Ribosome biogenesis [BR:
sja03009
]
Prokaryotic type
rRNA helicases
SJ2017_3463
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Helicase_C_2
AAA_30
AAA_19
AAA_22
CpsB_CapC
HNH_3
Motif
Other DBs
NCBI-ProteinID:
ARD23714
LinkDB
All DBs
Position
complement(4099045..4100448)
Genome browser
AA seq
467 aa
AA seq
DB search
MSQSTEQAANTAFASLNLKPDLLDNLKTMGYESMTQIQAESLPAIIAGDDVIGQGKTGSG
KTAAFGLGLLNKLNVKRFRIQTMVLCPTRELADQVAKDIRTLARGIHNVKVLTLCGGVPM
GPQIGSLEHGAHIIVGTPGRIVDHLDRNRLDLSNVNMLVLDEADRMLEMGFQDHIDQIIA
ETPHERQTLLFSATFPEQIQQIVEQIMYKPLMVKVEATHDNHTIEQHFYHTEDNQARLEA
LRLLLLEKQPESAVVFCNTKRETQKVADTLAEQGFSVLALHGDLEQRDRDQMLLRFANRS
ARILVATDVASRGLDIEDLEAVFNYHIAYDTEVHIHRIGRTGRAGSKGAAYTFFSHSDGH
RMVEIEELIGKEIDGETLPSMNVLNKHPLEAEMITIQIDAGKKHKIRPGDIVGGLTGENG
INGADIGKIKVTDIRSFVAVKRDASKKALNKITKGRLKGKTYRAWFL
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcagtctactgaacaggccgctaatacggctttcgcatcacttaatctgaaacca
gatttgcttgataacctaaaaaccatgggctatgagtctatgactcaaattcaagcagaa
agcttacccgcgattattgctggtgatgacgtaattggccaaggaaagaccggctcaggt
aaaactgctgcgtttggtttgggcttactcaataagttgaatgtgaaacgttttcgtatc
caaactatggtgttatgcccaactcgtgagttggcagatcaagttgccaaggatattcgt
acgctagctcgtggcatacataacgtgaaagtactgacgttatgcggtggcgtgcctatg
ggacctcaaatcggctcgcttgaacatggcgcacatattattgttggtacgccagggcgt
attgttgatcatttagatcgcaatcgtttagatcttagcaatgtgaatatgttggtatta
gacgaagccgatcgcatgttagaaatgggctttcaagatcatattgatcaaattattgct
gaaacgccgcatgaaagacaaacactgcttttcagtgcaaccttccctgagcaaattcag
caaattgttgagcaaatcatgtataagccactgatggttaaagtcgaggctactcatgat
aatcatacgattgaacagcatttctatcacacagaagacaaccaagcccgtttagaagcg
ttacgtttattgttattagagaaacagcctgaaagtgcagtggttttttgtaataccaaa
cgtgaaacgcaaaaagtggccgacacattagctgagcaaggtttcagtgttttagccttg
catggcgatttagaacagcgcgatcgcgatcaaatgctactgcgttttgctaaccgtagt
gcgcgtattttagtggcgactgatgtggcatcgcgtgggttagatatcgaagatttagaa
gcggtgtttaattatcacattgcttacgacactgaagtgcacattcaccgtattggccgt
acaggccgtgctggtagtaaaggcgcagcatacactttctttagtcattctgatggccat
agaatggttgaaattgaagagcttatcggcaaagaaattgatggtgaaacactgccttca
atgaacgtgcttaacaagcacccgcttgaagcggaaatgatcaccattcaaatcgatgca
ggtaaaaagcataaaattcgccctggcgatattgtgggtggcttaacgggtgagaacggt
attaatggtgctgatattggcaagattaaagtgactgatatccgctcatttgttgctgtg
aagcgtgatgcatcgaaaaaagcgttgaataaaataaccaaaggacgattaaaaggtaag
acttaccgtgcttggtttttataa
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