Shewanella japonica: SJ2017_3511
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Entry
SJ2017_3511 CDS
T04959
Name
(GenBank) formate dehydrogenase subunit alpha
KO
K00123
formate dehydrogenase major subunit [EC:
1.17.1.9
]
Organism
sja
Shewanella japonica
Pathway
sja00630
Glyoxylate and dicarboxylate metabolism
sja00680
Methane metabolism
sja01100
Metabolic pathways
sja01120
Microbial metabolism in diverse environments
sja01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
SJ2017_3511
09102 Energy metabolism
00680 Methane metabolism
SJ2017_3511
Enzymes [BR:
sja01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.1 With NAD+ or NADP+ as acceptor
1.17.1.9 formate dehydrogenase
SJ2017_3511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Molybdopterin
Pyr_redox_2
Molydop_binding
Fer4_20
Molybdop_Fe4S4
Fer2_4
Pyr_redox
Pyr_redox_3
Fer4_7
NAD_binding_8
DAO
Fer4_6
Fer4_8
FAD_binding_3
FAD_binding_2
Fer4
HI0933_like
FAD_oxidored
NAD_binding_7
F420_oxidored
Thi4
Fer4_21
AlaDh_PNT_C
MurD-like_N
GIDA
3HCDH_N
Fer4_10
Fer4_17
Fer4_18
Fer4_9
Fer4_2
Amino_oxidase
Fer4_15
Fer4_16
Glyco_transf_4
Lys_Orn_oxgnase
Motif
Other DBs
NCBI-ProteinID:
ARD23760
LinkDB
All DBs
Position
4155257..4159537
Genome browser
AA seq
1426 aa
AA seq
DB search
MITLNIDGKSLSVNSGRNLLQAAQEAGILIPSLCDSTSPQSAHKQDCNLCVVDINNNDGS
CRKAKACKTQVTDNMHVTTQSAELSELRRDALTHILSDHFADCEAPCQKACPAGVDIQSY
LFHIAQGNHTEAVKIIKQTLPLPLSIGRVCPAFCEAECRRGLVDEPVAIRQLKRHAADLD
LADEHSYQIERQPDTGKKVAIIGSGPAGLSAGYFLANQGHEVRIIESMPQAGGWLRYGIP
EYRLPKAILDKEIALLTANGLTISTNTRLGEDVHLKQLTDDYDAVCLAIGAQKAVPMNYP
GSDLTGCYLGVDYLRDYCTDKSYNIGKKVAVIGGGNTAIDCARTAVRAGHDVTIIYRRTR
DAMPAEPYEIHEAEVEGVKFHFLTNPVENISDENGQVTAINLAKMALGEPDSSGRRSPKA
TGETFIEAFDTVIAAVSQTPDMSFLEHPDSYLTSGEIALSRWNTFIGCEHTMSAGVDKLF
VIGDSRTGPATAVAAIGDGRKAAVAIDKLLNQGLSCELTPQQFNATKAPKTASLSTGLGA
DLYPSTKPEARYKMAELTAIERQLNFNEVEQGFEHSEAMKEAARCLECACQANTDCKLRD
YATEYHVDAKAFDTTQMQQFAVDKTSPFIQFDANRCISCGKCVDICGQQSGHNAISFEKD
SFQALPTDVIAETERTRQAPRVGFKATMADSDCVQCGNCVQVCPTGALVDARDKRQGSNE
QLNTTSTICTYCGVGCRINVSVSPSTGRICHVEGSNDSDVNEGMLCVKGRFGYDFIQSEQ
RLTTPLIRKNGELIPCGWDEAIDTIAQKLSAIKAQKGGDAIATLASAKATNEDNYLLQKF
VRSVLGTNNIDHCARLCHASTVSALQQSLGSGAMTGDIPGIKDSDLIFILGSDTCNAHPI
IASKIKQAIRHNGARLMVADPKHISIADEAELYVAQKPGTDVALINAIMAEIIRNDWHDK
DYIAEHTDGFDAVIDTVMQPKYSLENAAKVCGINAEKIAQMARLIGTAKKTAIYYAMGIT
QHTSGHDNVTAISNLQMLCGNLGQSGAGINPLRGQSNVQGACDMGALPQYYTGYQKVDNP
DAQAKFEQYWDTSLSPNVGLTATEVMHAITENKVDALYVMGENPVLSDPDQAHVLAALEK
IPLLVVQDIFLTETAKMADIVLPAASFAEKLGHFTNTERRVQRLQPVLPPPGLAKQDWKI
VHAIANKMGANWDYANEQAITNEINLVTPQYQGITWDRLNNDAQGKPSKGIQWPCVNEQD
SGTAVLHQHGPIKGKGLFTAVEHRSPAEPVDDEYPLVLSTGRLLEQFHTGTLSRKTQGLD
KLGSPRVMISVFDAEQLGVKNGDTLKLSTRRGEIEINAFVTKRAQAGVLFLPFHFAESAA
NKLTINAIDPVAKIPEFKVCAVKAERVSKPVLSQKVSSNHAEPALA
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atgattacactcaacatagacggcaaatcattgtcggttaatagtggaaggaatcttctc
caagctgcacaggaagcaggcatccttattccgagtttgtgtgactcaacctcgccacag
tcagcgcacaaacaagactgcaatttgtgtgtagtcgatatcaataataatgacggtagt
tgccgcaaagctaaggcttgtaagacccaagttaccgacaatatgcacgtcaccacccag
agcgcagaattaagtgaacttcgccgtgatgcattaacccatattttgtctgatcatttt
gctgactgtgaagcgccctgccagaaagcttgcccagcaggtgtggatattcaaagttac
ttatttcatatcgcccaaggtaatcacactgaagcggtaaaaataattaaacaaacctta
ccactgccgttatctattggccgagtttgcccagcattttgtgaggctgagtgccgccgt
ggtttagttgatgagcctgtagcaattcgccaattaaagcgccacgcggcagatttagat
ttagctgatgagcacagttaccaaattgaacgtcaaccagataccggtaagaaagtcgcc
atcattggcagtggccctgctggattaagcgcaggctattttttagcaaatcaaggtcat
gaagtccgcattattgaatcaatgccgcaagctggcggttggctgcgttacggtattcct
gaataccgcttacctaaagcaatccttgataaagaaatcgccttattaaccgctaatggg
ttaacgatttcaaccaatacccgactgggtgaagatgttcatttaaagcaattaactgat
gattatgatgcagtttgtttagccatcggggcacaaaaagccgtgccaatgaattatccc
ggtagcgacttaacaggctgttacttaggcgttgattacctacgtgattactgcacagat
aaaagctataacatcggtaaaaaagtcgctgtcattggtggtggtaatacggccattgac
tgtgctcgcaccgcagtacgcgctggccatgatgtcactattatctatcgccgtactcgt
gatgccatgccagctgagccttatgaaatccacgaggcggaagttgaaggagttaagttt
cactttctgactaatccagttgaaaacattagcgatgaaaatggtcaagtcacagcaatt
aatttagctaaaatggcattaggtgaaccagactcatcaggcaggcgttcacctaaagca
actggcgaaacctttatcgaagcctttgatactgtgattgccgccgtatcacaaacccca
gatatgagctttttagaacaccctgacagttacttaaccagtggtgaaattgccttgagt
cgctggaatacctttataggctgcgagcacaccatgtctgcaggggttgataaattgttt
gtgattggtgattctcgcacaggtcctgccaccgctgttgctgcgattggtgatggccgc
aaggcagctgttgcaatcgataaactactcaatcaaggtttgagctgtgagctaacgcca
caacagtttaatgccactaaagccccaaaaacagcgtcactaagtacaggacttggtgca
gacctttacccgagtaccaagcctgaggctcgttataaaatggctgaactcacagccatt
gaacgccaacttaactttaatgaagtggaacaaggttttgaacatagtgaggcgatgaaa
gaagcggctcgctgtttagagtgtgcttgtcaggctaacactgattgtaaactgcgagac
tacgccactgaatatcatgtggatgctaaagcgttcgataccacacaaatgcagcagttt
gccgtcgataagaccagcccgtttattcagtttgatgccaaccgctgcatcagttgtggc
aagtgtgtcgatatttgtggtcagcaaagtggccataatgcgattagctttgaaaaagac
agctttcaagcgctgcccactgatgtcatcgctgaaacagagcgcactcgtcaagcccct
cgagtgggctttaaagcaacgatggcagacagtgattgcgttcaatgtggtaactgcgtg
caagtttgcccaacgggtgcattggttgatgcacgtgataagcgtcaaggcagtaatgaa
caacttaacaccacatcaaccatatgtacttactgcggtgtgggctgtcgaattaacgtc
agcgtatcaccatcgactggtagaatatgccatgtagaaggcagcaatgattccgacgta
aacgaaggtatgttgtgcgttaaaggtcgttttggttatgactttattcaaagtgagcaa
cgtcttaccacgccgcttattcgtaaaaatggcgaactaattccttgcggctgggatgaa
gccatagacacaatcgcacaaaagctttccgcaattaaagcccaaaaaggcggtgatgcg
attgccaccttagcttctgctaaagccaccaacgaagataactatttgctgcaaaagttc
gttcgtagtgtgctcggtaccaacaatattgatcactgcgcccgcctatgtcatgccagt
accgtatcagcgctgcagcaaagtttaggtagcggcgcgatgacaggcgatattccggga
attaaagattcggatttgatctttattttaggctcagatacttgcaatgctcacccaatc
attgcatctaagatcaaacaagcaatccgtcataacggtgcacgcttgatggtcgccgat
cctaaacacatatctattgcagacgaagccgaactctatgtggcgcaaaagcctggaacc
gatgttgccttaatcaatgccattatggccgaaatcatccgcaatgattggcatgataaa
gattatattgccgagcataccgatggctttgacgcagttatcgatacggtaatgcaacct
aaatactcgttagaaaatgccgctaaagtctgtggtattaatgcagaaaaaattgcccag
atggcaaggttgatcggcactgctaaaaagactgcgatttactatgcaatgggcattacg
caacatacttctggccatgacaatgtcactgccatttccaatctgcaaatgctatgcggt
aacttaggtcaatctggcgcggggattaacccacttcgtggccaaagtaatgtgcaaggt
gcttgcgatatgggcgcactccctcagtactacactggctatcaaaaggtcgataatcca
gacgctcaagcgaaatttgagcagtattgggatacttctttatcgccaaatgtaggactc
acagcgacagaggtgatgcatgcaatcactgaaaataaagtcgatgcgctttacgtgatg
ggtgaaaaccctgtacttagcgatcccgatcaagctcatgtgttagctgcactagagaaa
ataccgcttcttgttgtgcaagatatctttttgacagaaacagctaaaatggccgatatc
gtgttaccagctgcatcgtttgctgaaaagctcggccacttcaccaatactgagcgccgt
gtgcagcggttgcaacccgtgctcccaccacccggtcttgctaagcaagactggaaaata
gttcacgctattgccaacaaaatgggggctaattgggattatgctaatgagcaagccatt
acaaatgagataaacctagtgacgccgcaatatcaaggcatcacttgggacaggctcaac
aatgatgcacaaggcaaacctagcaaaggtattcaatggccatgtgtcaatgagcaagac
tcgggcaccgcggtattacatcaacatggaccaataaaaggcaaaggcttatttactgcg
gttgaacaccgaagtcctgctgagccagttgatgatgaatacccattagtgttatctaca
ggtcgcttgttggaacaattccatacgggcactttgagccgtaaaacccaaggcttggat
aagctgggctcaccaagagtcatgatatcggtgtttgatgcagaacaattgggcgttaaa
aatggtgataccttgaaactatcaactcgccgaggtgaaattgaaatcaacgcctttgta
accaaacgagctcaagctggcgtgttatttttgccgttccattttgctgaatctgcggca
aataaactcaccatcaacgccattgaccctgtggcaaaaatccctgagttcaaggtgtgc
gcggtaaaagccgagcgtgtttccaaacctgttctcagccagaaagtgagcagcaatcat
gctgaacccgcattagcttaa
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