Shewanella japonica: SJ2017_3639
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Entry
SJ2017_3639 CDS
T04959
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
sja
Shewanella japonica
Pathway
sja02020
Two-component system
sja02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SJ2017_3639
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SJ2017_3639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sja03021
]
SJ2017_3639
Transcription machinery [BR:
sja03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SJ2017_3639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
DUF5039
Motif
Other DBs
NCBI-ProteinID:
ARD23885
UniProt:
A0ABN4YK93
LinkDB
All DBs
Position
4298719..4300203
Genome browser
AA seq
494 aa
AA seq
DB search
MKASLQLKMGQHLTMTPQLQQAIRLLQLSSLELQQEIQQALDSNPLLELEDEFAKAKEPV
KDNAQQTDTDFSDNSQVSVEKDTSSVDTTESLTKESMPEDLPMDTTWDEVYTASPNSGSG
AVSRDDDMPFQGETTEGLYEHLEWQKNLTPFSENDLAIATAIIDAIDDRGYLTQSTEDIL
DALGLEDIELDEVEAVLKRVQHFDPVGVAARNLSECLMIQLGQYPSEIPCIENVKLLISE
HLDLIAGRDFRLLMRKTKLKEDDLREAIQFIQTLNPRPGLQITPIKDEYVIPDVTVFKKN
GRWVVELNPDNMPKIGVNQQYAAMAKGSANQADSQFIRGHLQEAKWFIKSIESRNETLLK
VANCIVQFQQGFFEFGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGLFELKYF
FSSHVSTDDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMATLLAEQGINVARRTIAKYR
EAMLIPPSNQRKSL
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcctcactccaacttaaaatgggtcaacacctgacaatgaccccgcagttgcaa
caagccattcgcttattgcaactttcctctttggagctacagcaagaaattcagcaagca
cttgactcaaatcctcttcttgagcttgaggatgagtttgccaaagcaaaagaaccagtc
aaagacaatgctcagcaaactgacaccgattttagcgataacagccaagtcagcgtagaa
aaagacacctcatcagtcgatacaacagagtcacttacgaaagagtccatgcctgaagac
ttaccaatggataccacttgggatgaagtctacaccgcctctcctaactcaggttctggc
gctgtaagccgtgatgacgatatgccatttcaaggtgaaacgactgaaggtttatacgaa
catttagaatggcaaaaaaacttaaccccattttctgaaaatgacctcgccattgcgaca
gccatcatcgacgcaattgatgatagaggttacttaacccaatcaacagaagatattctc
gatgcactcggtcttgaggatattgaacttgatgaggttgaagccgtattaaagcgtgta
caacattttgatccagtgggcgtcgctgcaagaaatttaagcgaatgtttgatgattcaa
ttgggacaatacccaagcgaaatcccttgcatagaaaatgtaaaattactgatatctgaa
cacctagatttaatagcaggtcgtgatttcagattactaatgcgtaaaaccaagcttaaa
gaagatgatttacgcgaagcgattcaatttatccaaacactgaaccctcgcccagggtta
caaattactccaatcaaagatgagtacgtcatcccagatgtcacagtgtttaaaaagaat
ggccgttgggtcgtagaattaaacccagataatatgcctaaaataggcgtaaatcagcaa
tatgccgccatggcaaaaggctcagccaatcaagctgacagccaattcattcgcggtcac
ttacaagaagccaaatggtttattaaaagtattgaaagccgcaatgaaaccctgttaaaa
gtggcaaattgtattgttcaattccagcaaggtttctttgagttcggcgaagaagccatg
aagcctatggttttaaatgatattgccgaagcggtagagatgcatgaatcgaccatctca
cgggttacaactcaaaaatatatgcacacccctcgcggcctttttgaactaaaatacttc
ttctctagccacgtaagtaccgatgatggcggagagtgttcatctacagcaatcagagcc
tttatcaaaaagctggtcgctgcagaaaaccagaaaaagccacttagcgatagtaaaatg
gcgacgctactggctgaacaagggatcaatgttgctcggcgtacgatcgccaaatatcgt
gaagcaatgctcatccctccctcaaaccaacgcaaaagcttataa
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