Shewanella japonica: SJ2017_3667
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Entry
SJ2017_3667 CDS
T04959
Name
(GenBank) ATP-dependent DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sja
Shewanella japonica
Pathway
sja03420
Nucleotide excision repair
sja03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SJ2017_3667
03430 Mismatch repair
SJ2017_3667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sja03400
]
SJ2017_3667
Enzymes [BR:
sja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SJ2017_3667
DNA repair and recombination proteins [BR:
sja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SJ2017_3667
MMR (mismatch excision repair)
Other MMR factors
SJ2017_3667
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
ARD23913
UniProt:
A0ABM6JPA6
LinkDB
All DBs
Position
complement(4327048..4329216)
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AA seq
722 aa
AA seq
DB search
MDVSSLLDGLNEMQREAVGAPLSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAV
TFTNKAAAEMRERVEKVVGTNMGRMWIGTFHGLAHRLLRTHYQDANLPQSFQIIDSDDQL
RLLKRILKSLNLDEKQYPPRQCQGYINGKKDQGLRPKHIDAGGFPIEQNLLNIYKIYQES
CDRAGLVDFAEILLRAHELWLNKPHVLAHYQERFKHILVDEFQDTNAIQYAWIRVLAGNS
ANVMIVGDDDQSIYGWRGAQVENLHRFLNDFPGSNTVRLEQNYRSTANILNASNELIANN
PERLGKKLWTEDKAGEPISVYCAFNEMDEARFIVGKMAEWHAKGGNLADCAILYRSNAQS
RVLEEALLHKGLAYRIYGGLRFFERQEIKDAMGYMRLINNKDDDAAFERVVNTPTRGIGN
RTLEIIRSTARQQEMTMWQASVRLIEEKVLTGRAANAVNGFMDLVIGMRTDTLDMSLYSM
TDTVIQRSGLRAMYEAEKGEKAQSRVENLNELVTAARSFEMPEELEDMGELNAFLSHAAL
EAGEGQADKFTDAVQLMTLHSAKGLEFPVVFMAGVEEGIFPSKMALDEGDRLDEERRLCY
VGMTRAMQKLYISYAESRRIYGREDYASPSRFIGEIPSEYVEEIRMKASVSAPAMSSRFN
VPRQSIANDSGFKVGQKVKHFKFGQGIVTDFEGTADKARVQVNFTDFGSKWLLVSLAKLE
SC
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcatctttattagacggcttaaatgaaatgcagcgtgaagcagtgggcgca
ccgctttctagcatgcttgttttggctggagcaggcagtggtaaaacacgggtattaacc
caccgtattgcttggttgatgcaggttgaacaacaaagtccatactccattttagcggta
acctttaccaataaagcggcggcagaaatgcgtgagcgtgttgaaaaggtcgtcggcacg
aatatgggtcgcatgtggattggtaccttccatggattagcgcatcgtctactgcgtacc
cattatcaagatgctaatttgccgcaaagcttccagatcattgattctgatgaccaatta
cgtttacttaaacgtattcttaaaagcctcaatttagatgaaaagcaatatccgccacgt
caatgccaaggttatatcaatggtaaaaaagaccaaggattacgcccaaagcatattgat
gccggcggttttcctattgagcaaaatctacttaatatctacaaaatttatcaagagtca
tgcgatcgcgctgggttagtcgactttgctgaaatcctattacgtgctcatgaattgtgg
ctcaataaaccccatgttttggcgcactatcaagaacgctttaaacatattttggtagac
gaatttcaagataccaacgccattcaatatgcgtggatcagagtgttagcgggtaactct
gccaatgtgatgattgtcggtgatgacgatcagtccatatatggctggcgtggcgctcaa
gttgaaaacttgcatcgctttttaaatgacttccctggttcaaataccgttaggcttgag
caaaattatcgctcaacagctaacattttgaatgcttcgaatgaattaattgctaataac
cctgagcgtttaggtaaaaaactgtggaccgaagataaggcgggtgagcctatttcagtc
tattgcgcctttaacgaaatggatgaagcccgttttattgtcggtaaaatggctgaatgg
catgccaaaggtggcaacttagcggattgtgcaattttatatcgctctaatgcgcagtct
cgtgtgcttgaagaagcgttactgcataaaggcttagcgtaccgtatatacggtggctta
cgcttcttcgaacgccaagaaattaaagatgccatgggttatatgcgtcttatcaataat
aaagatgacgatgccgcttttgaaagggttgtgaacacgccaacccgtggtattggtaac
cgtaccttagagattattcgctctacagcgcgtcagcaagaaatgaccatgtggcaggcc
agtgttcgcttgatagaagaaaaagtattaacaggccgagcggcgaacgccgttaatggc
tttatggatttagtgattggtatgcgtacagacaccttagatatgagtctgtatagcatg
acggataccgtgattcagcgatctggattgcgtgcaatgtacgaagccgaaaaaggcgaa
aaagcccaatctcgtgttgagaacttaaacgagctagttaccgcagctcgcagctttgaa
atgcctgaagaactggaagatatgggcgagctaaatgcctttttatctcatgctgcattg
gaggctggtgaaggccaagctgacaagtttactgatgctgtgcagttaatgacattgcac
tcagctaaagggctagagtttcctgtggtgtttatggcaggggttgaagaaggtattttc
ccaagtaaaatggcactggatgaaggtgaccgtttagatgaagaacgccgcttatgttat
gtgggcatgacccgagcgatgcaaaaactgtatatcagctacgctgagtctcgtcgtatt
tatggtcgtgaagattatgccagtccttcacgctttattggtgaaattccatctgaatac
gttgaagaaatacgcatgaaggcctcagtctctgcgccagcaatgagcagtcgctttaac
gtgccacgtcaatccattgccaatgacagtggctttaaagtcggccaaaaagtgaagcat
tttaagtttggtcaaggcattgtcactgactttgaaggcacagctgataaagcccgagtt
caagtgaactttaccgactttggcagtaagtggttattagtatcactagcaaagctagag
tcttgctag
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