Shewanella japonica: SJ2017_3754
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Entry
SJ2017_3754 CDS
T04959
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
sja
Shewanella japonica
Pathway
sja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SJ2017_3754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sja03019
]
SJ2017_3754
Enzymes [BR:
sja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SJ2017_3754
Messenger RNA biogenesis [BR:
sja03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SJ2017_3754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ARD23993
LinkDB
All DBs
Position
complement(4434418..4435716)
Genome browser
AA seq
432 aa
AA seq
DB search
MSETHLSTQRFADFPLKPEVVQALNENGFEFCTPIQALSLPILLQQKDIAGQAQTGTGKT
MAFLVATFNHLLSVAVPEGRQVNQPRSIIMAPTRELAIQIAKDAKLLEKHTGLKVGIVYG
GESYDVQRQVLDAGVDILIGTTGRIIDYVRQGVISLNSIQAVVLDEADRMFDLGFIKDIR
FLFRRMPDAKSRLNMLYSATLSMKVQELAYDHMNDPEKVEIAPEQKTSKNIKEEIFYPST
DDKMRLLLTLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRVGLLTGDVPQKKRIRILE
QFTNGSLDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFA
CEEYALNLPAIETYIKHSIPVTNYDREALLDDLPPPVRIHRKHPTTRGRDGANRNGAHRS
GGRPPQRNRRHS
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaacacatttatctacccaaagattcgccgacttccctctgaaaccagaggtt
gttcaggctttaaacgaaaatggctttgaattttgtacgccgatacaggcgttatctctc
cccattttattacaacaaaaagatattgcaggtcaggcacaaacaggtactggcaagaca
atggcttttttggttgcaacctttaaccatcttttatccgttgccgtgccagaagggcga
caagtcaatcagccacgttcaattatcatggcgccgactcgcgaattagcgattcagatt
gcaaaagatgccaaattattagaaaaacataccggcttaaaagtgggtattgtttatggc
ggtgaaagctatgatgttcaacgccaagtgcttgatgctggtgttgatatccttattggc
acaacgggtcgtattattgattacgttcgccaaggtgtgattagtttgaactcgattcaa
gctgtcgtattagatgaagctgaccgtatgttcgacttaggctttattaaagatatccgt
ttcttgtttagacgtatgcctgatgcgaaatctcgcttgaatatgctttattcagcgaca
ttatcaatgaaggtacaagagctagcttatgatcatatgaatgatcctgagaaagtcgaa
attgcgcctgagcaaaaaacgtcaaaaaacatcaaagaagaaattttttacccttcaaca
gatgacaaaatgcgcttgttgctaacattattagaagaagactggccagaaaaagccatt
gtattttctaataccaagcacagctgcgaaaaagtatggtcatggttagaaggtgatggt
catcgtgttggattactgacaggtgacgtgccgcaaaagaaacgaattcgtattcttgag
caatttactaatggttcgcttgatgtgttagtggcaactgatgttgctgcgcgtggctta
catatttctgatgtatctcatgtatataactatgacttaccggatgactgtgaagattat
gttcaccgtattggccgtactggccgtgcaggtcaaaaaggcgtgtcagtgagttttgcc
tgtgaagaatatgcattaaacttacctgcaattgagacttacattaagcactcaattcca
gtgacaaattacgatcgtgaagcgttacttgatgatttaccgccaccagtgcgtattcat
cgtaaacacccaacgactcgtggtcgtgatggtgctaaccgtaatggtgctcaccgcagt
ggtggtcgtccacctcaaaggaatcgcagacactcgtaa
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