KEGG   Shewanella japonica: SJ2017_3756
Entry
SJ2017_3756       CDS       T04959                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
sja  Shewanella japonica
Pathway
sja03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sja00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SJ2017_3756
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sja03021]
    SJ2017_3756
   03019 Messenger RNA biogenesis [BR:sja03019]
    SJ2017_3756
Transcription machinery [BR:sja03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     SJ2017_3756
Messenger RNA biogenesis [BR:sja03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     SJ2017_3756
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 AAA Spore_III_AA DUF961 NACHT S1CSD-TOTE-2
Other DBs
NCBI-ProteinID: ARD23995
UniProt: A0ABN4YNN3
LinkDB
Position
4436545..4437810
AA seq 421 aa
MNLTELKDTSISDLVSLAESMKLDNMARARKQDIIFSILKAHAKSGEDIFGGGVLEILQD
GFGFLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRPPKDGERYFALLKVNEVN
FDKPENSRSKILFENLTPLHAEDRLRMERGNGSTEDITSRILDLYSPIGKGQRGLIVAPP
KAGKTLLLQNMAQSITYNNPEVVLMVLLIDERPEEVTEMQRMAKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF
FGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQELHLSRKAAEKRVFPAIDF
NRSGTRREEKLTTPDELQKMWILRKILNPMDEVSGMEFLIDKLAMTKTNDEFFTAMKRAK
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatttaactgaattaaaagacacgtctatatcggacctagtttcactcgctgaaagc
atgaaattagacaatatggcccgtgctcgcaagcaggacatcattttctcaattctgaaa
gcccacgccaaaagcggtgaagatatctttggtggcggtgtattagaaatccttcaagat
ggtttcggatttttaagaagttcagatggttcttacttagcaggccctgatgacatttat
gtctctccaagccaaattcgacgcttcaatatgcgtaccggtgataccatctttggtaaa
atccgcccaccaaaagacggtgaacgctattttgccctgctaaaagtcaacgaagtaaac
ttcgacaagcctgaaaattctcgttctaaaatcttattcgaaaacttaaccccgctacat
gcagaagatcgcctacgcatggaacgcggtaatggttcgactgaagatattacctcgcgt
attcttgatttatactctcctatcggtaaaggtcaacgtggcttgattgtcgcaccgcca
aaagcgggtaaaaccttattacttcaaaacatggcgcaaagcattacctacaacaaccca
gaagtggtgttaatggtattactgattgacgaacgtcctgaagaagtaaccgaaatgcaa
cgcatggcaaaaggtgaagtgattgcttcaacctttgatgagccagcttcacgtcacgtt
caagtggcagaaatggttatcgaaaaagccaaacgtttagttgaacacaaaaaagacgtg
gtgattttattagactcaatcacgcgtctagcacgtgcatacaacaccgtgattccatca
tcaggtaaagttctgaccggtggtgttgacgctaacgccctgcaccgtccaaagcgtttc
tttggtgctgcacgtaacatcgagcacggtggtagcttaaccattattgcaacagcgctt
gtcgatactggttctaagatggatgaagtcatttacgaagaatttaaaggtactggtaac
caagagttacacctttctcgtaaagcagctgaaaaacgtgttttcccagcgattgatttc
aaccgctcaggtacacgtcgtgaagaaaaacttaccaccccagatgaacttcagaagatg
tggattttacgtaaaatccttaatccaatggatgaagtttcaggcatggaattccttatc
gataaattggccatgaccaagacaaacgatgagttcttcactgcgatgaaacgcgctaaa
acctaa

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